Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq29087 138 8e-28 seq174935 93.3 3e-14 seq47242 82.4 5e-11 >seq29087 Length=41947 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | || || || || ||| |||||| ||||||||||| || Sbjct 34851 CATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 34792 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||||||||||| | ||||||||| | Sbjct 34791 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGG 34732 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | |||||||| || || Sbjct 34731 AGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTC 34672 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 34671 CACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 34621 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | || || || || ||| |||||| ||||||||||| || Sbjct 35079 CATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 35020 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||||||| || || || ||||||| | ||||||||| | Sbjct 35019 GGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGG 34960 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | |||||||| || | Sbjct 34959 AGGAATGCCTTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCT 34901 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 34900 CCACCTCCAGGGTGATGGTCTTYCCAGTCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||||||| | | || || || || || |||||| ||||||||||| ||| Sbjct 35306 ATGCCTCCTCTCAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 35247 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| || | || |||||||| || || || ||||||| | ||||||||| | | Sbjct 35246 GAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGA 35187 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||||| ||| ||||| ||| | | | |||||||| || ||| Sbjct 35186 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 35127 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 35126 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 >seq174935 Length=570 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||||||||| | | ||||||||| | ||| | |||||||| ||| Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| || |||||||||| || || ||||| Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||| ||||| ||||| Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCAT 149 >seq47242 Length=5371 Score = 82.4 bits (90), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| |||||||||| |||| ||| | || |||||||| || || |||||| Sbjct 2047 CCTTTCTGGATATTGTAATCGGAGAGTGTGCGTCCATCTTCCAGCTGTTTTCCCGCAAAG 2106 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCT 44236 |||| |||||||||||| | ||| | |||| Sbjct 2107 ATCAGACGCTGCTGATCAGGAGGAATACCT 2136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359174048419956