Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq51587 143 4e-29 seq13272 131 2e-25 >seq51587 Length=8236 Score = 143 bits (158), Expect = 4e-29 Identities = 190/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 |||||| ||||||||| ||||| || | | | |||| | || ||||| | | Sbjct 4368 GGACACTGCTTGACGTTCAGGCAGACCAGTTTTTCCAAACTTGCCGTGTTCACGATTCGG 4309 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || || | ||||| || ||||||||||||||||| | | |||||||||| |||| Sbjct 4308 AAGCCGGCGGCACCGCCAAAAGTGCTGGGCTTCCAGTATTCGGAGGAGCAGATGGGGTTC 4249 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||| || || | |||||| |||||||||| ||| | ||||||| || |||||| Sbjct 4248 CCCAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCTATCATGCTCTGTCCAAAGATG 4189 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 |||||| || ||| |||||||| | |||| | | | ||||| ||| || | |||| Sbjct 4188 CCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGAAGAACTCCAGAGCATCAATGTCT 4129 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCA 8566 || || || || |||| |||| Sbjct 4128 CCATACAGCGCTTCCAGTTTGGCA 4105 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | |||||||||||| ||||| || ||| || |||||||| ||||| Sbjct 901 ATGAGCCGGGCGGTCTGGAACAGCTGCTCATCGTCCCAGGTAGGGTGTTCTTGCTTCAGC 842 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | ||||| |||| ||||||| ||||| ||||||| ||| || || Sbjct 841 AGGTCACAGACACGATTGTGCTCCCGCAGCCAGAGGGTGGCATACATCAGGAGGCCTGGG 782 Query 9364 ACCAGGCCAAAAGCCTCTTGACC 9386 | || ||||| ||||||| || Sbjct 781 AGAAGACCAAAGACCTCTTGGCC 759 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9085 TGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTA 9144 |||||||| |||| | ||| ||||| | || || || ||||| |||||| | Sbjct 2197 TGCCAGTGGTACAGCTGGTTGAACTCCAGAGCGATGCGGTTCTGGTATTGGAACTGGGCC 2138 Query 9145 CCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCGCTGAGCTGCTGAACG 9204 ||||| || || |||||| |||| ||||| ||| |||||||||||||| ||||| ||| Sbjct 2137 CCAAACAGAAGCTCGGGCGCAAACGTCAGCTTAAAGTGGTAGCCGCTGAGATGCTGGACG 2078 Query 9205 TATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || | | | || ||| ||||| || || || Sbjct 2077 TAATCCTCAATGACAATTTTGATCGTCTCACC 2046 >seq13272 Length=16287 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| || ||| | || ||| ||||||||| |||||| || || || || || ||| Sbjct 7304 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGGACGTCACAGACC 7245 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 7244 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 7185 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || || || || | | ||| ||||||||||| | Sbjct 7184 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCT 7125 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| ||||| || | || ||||||||||| || ||||||||||| Sbjct 7124 GCCTGAGTTTCTTTCACAGTAGGCGGATACATTTCTCCATCAATCATCTG 7075 Score = 118 bits (130), Expect = 2e-21 Identities = 172/238 (72%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCT-CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGA 8409 || ||||| | || ||||| ||| || || || || || ||||||||||| | || || Sbjct 10254 TTCACGATGTCAAAGCCCAC-TCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGA 10196 Query 8410 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCT 8469 ||||||||| || |||| || ||||| | |||||| |||||||| | || | ||| | Sbjct 10195 GCAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGT 10136 Query 8470 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCA 8528 |||||| |||||||| || || ||||||| || |||||| | | ||| | |||| Sbjct 10135 CTCACCAAAGATGGCTCCAGGGCGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCA 10077 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || | ||||| || || | ||||| ||||| || || ||||| ||||| Sbjct 10076 TAGCATCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 10019 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || || ||||| |||||| | || ||| | | ||| || | || Sbjct 5961 CTTACCCCATGCCCAAGACCTTTTGTGAAGCCTGGTCCTTTCTGAATATCTGTTTTGAAG 5902 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 5901 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 5842 Query 9770 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799 ||| |||| | |||| || |||| ||||| Sbjct 5841 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 5811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715209452094720