Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq29087 143 6e-29 >seq29087 Length=41947 Score = 143 bits (158), Expect = 6e-29 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| |||||||| || ||| Sbjct 34852 CAGATCTTYGTGAAGACCTTGACTGGRAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 34909 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| || ||||| || |||| Sbjct 34910 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGC 34969 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || |||||||| |||||||| | || || |||| || ||| Sbjct 34970 AGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 35029 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 35030 TCCAGAAGGAGTCCACCCTCCATCTTGT 35057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200861509333192