Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq29087 129 5e-25 >seq29087 Length=41947 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 34838 AGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 34779 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | |||| || ||| Sbjct 34778 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCC 34719 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 34718 TTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 34659 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || |||| ||||| || || |||||||| || Sbjct 34658 ATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618 Score = 125 bits (138), Expect = 7e-24 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 35066 AGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 35007 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| ||||| ||||| | ||| || || | |||| || ||| Sbjct 35006 CCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCC 34947 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| ||| || ||| |||| | || ||||| || | ||||||||||| Sbjct 34946 TTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 34891 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| ||||| || || |||||||| Sbjct 34890 GGTGATGGTCTTYCCAGTCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||||||| ||||| |||||||||||||| || Sbjct 35294 AGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 35235 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| ||||| ||||| | ||| || || | |||| || ||| Sbjct 35234 CCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCC 35175 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 35174 TTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 35115 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 35114 ATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461228750241600