Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq387423 93.3 4e-14 >seq387423 Length=3253 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| ||||| || || || || |||||||| || | || |||||| ||||||| Sbjct 2658 ATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTT 2717 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||||| ||||||||| | || || || ||||||||||| || || || || | |||| Sbjct 2718 TCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAA 2777 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 2778 ATGCTACTACACGTTC 2793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||||| ||||| || || | || || ||||| || |||||||||||||| || ||| Sbjct 1188 ACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGA 1247 Query 16724 GATATATTCTCCATGAAATCAAAAGGATT 16752 || ||||||||||| || ||||| || || Sbjct 1248 GAGATATTCTCCATAAAGTCAAATGGGTT 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514483153298400