Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq252873 150 2e-31 seq291000 125 7e-24 >seq252873 Length=5941 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || ||||| ||||||||| | || || || || Sbjct 1024 AAAATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1083 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | |||| |||||| || || | ||||| || ||||| || | || Sbjct 1084 AGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGA 1142 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || |||||||||||||| || | ||||| ||| |||||| Sbjct 1143 TCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTA 1202 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || ||||| || |||| ||||||||||| Sbjct 1203 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGC 1254 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || ||| | Sbjct 1255 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGC 1314 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | || || Sbjct 1315 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1374 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || |||||||||||||| || | ||||| ||| |||||||||| Sbjct 1375 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAAC 1434 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| |||| || || || || |||| |||| |||||| Sbjct 1435 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGAGAGGCGGC 1482 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 |||||||||||| || | ||||| ||| |||||||||||||||||||||| |||| || Sbjct 1612 CAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAACATCCAGAAGGAGTCCACCCT 1671 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || |||| |||||||| || Sbjct 1672 CCATCTTGTCCTGCGTTTGAGGGGTGG 1698 >seq291000 Length=249 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 1 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 60 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || || ||||| || | || || Sbjct 61 GACACCATTGAGAACG-TCAAGGCGAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 119 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || |||||||||||||| || | ||||||||| ||||||||| Sbjct 120 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 179 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| || | || ||||||| || Sbjct 180 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512170519188800