Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq252873 114 1e-20 >seq252873 Length=5941 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | |||||| ||| || | Sbjct 1234 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCCA 1175 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || |||| || | ||||||||||||||| ||||| |||||||| | Sbjct 1174 GCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 1115 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||| ||||| | ||| | || |||| Sbjct 1114 TCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGC 1055 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||| |||||||| Sbjct 1054 CGGTCAAGGTCTTCACAAAGATCTGCAT 1027 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || ||||||||||| ||| | ||||| ||| || Sbjct 1463 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCC 1404 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| || | ||| ||||| ||||| ||||| |||||||| Sbjct 1403 AGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGG 1344 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 1343 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTCTTG 1284 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| || || ||||| ||||||||| Sbjct 1283 CCGGTCAAGGTCTTCACAAAGATCTGCATG 1254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431327494138960