Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value SEQ43688 138 2e-27 seq105552 105 1e-17 >SEQ43688 Length=11187 Score = 138 bits (152), Expect = 2e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| ||||||| ||| || |||||||||||||| || || |||| || | Sbjct 3878 GATAGCAGGAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAAT 3819 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||| ||||| || || || ||||||||||| | || ||||| || || ||||| ||||| Sbjct 3818 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTT 3759 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| | | ||||| || || || ||| |||| ||||| || Sbjct 3758 CACTATGTTTACTTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 3708 Score = 107 bits (118), Expect = 4e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| | ||| |||| || |||||| ||||||||| |||||||| Sbjct 1930 GCATTTTTTGGAGCTCATATCAATGCTTTCATTCATGTTGTTATGTACATGTATTATGGA 1871 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | |||| ||||| || ||||||||||| || | || ||| Sbjct 1870 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTACCTTTGGTGGAAACGATACTTGACCATA 1811 Query 52177 ATGCAGTTGGTA 52188 ||||| || ||| Sbjct 1810 ATGCAATTAGTA 1799 >seq105552 Length=5688 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | || | || || || || |||| ||||| || |||||||| || Sbjct 79 GGTTCAGTTCCATGTGACTCTTGGCCACACCGCCCTGTCTATTTATATTGATTGCCCCTT 138 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||| |||||||| || ||| || ||| ||||| | | | |||||| | |||||||| Sbjct 139 TCCTAAATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTATTCTGTTTGG 198 Query 52305 TAACTTCTATTTTAGAACATACAAGA 52330 ||||||||| | | | |||||||||| Sbjct 199 TAACTTCTACTATCGGACATACAAGA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917734013735200