Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq252873 104 1e-17 >seq252873 Length=5941 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| |||||||| | || || ||||| |||||||||||||| Sbjct 1481 CCGCCTCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1422 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||| ||||| || || || |||| ||| || || || Sbjct 1421 AGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGA 1362 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | ||| | | || || Sbjct 1361 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 1302 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| | || ||||||||||||||||| Sbjct 1301 TCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1255 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || || ||||| |||||||||||||| Sbjct 1253 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1194 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || || || |||| |||||| ||| || Sbjct 1193 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGA 1134 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||| | | || || Sbjct 1133 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 1074 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| | || ||||||||||||||||| Sbjct 1073 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321208094652800