Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq387423 116 3e-21 SEQ61574 105 6e-18 seq206962 102 7e-17 >seq387423 Length=3253 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| ||||| || ||||| || |||||||| || Sbjct 2663 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 2722 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||| | ||||| || ||||||||||| || ||||||||||| |||||||| Sbjct 2723 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 2782 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 2783 ACTACACGTTCACC 2796 >SEQ61574 Length=9803 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||| ||| ||||| || ||| || |||| ||| | |||||||||| | | || Sbjct 9460 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTCGGACATAACTGCAAAATGTT 9519 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||||||| | ||||||||||| ||||||||||| | ||||| ||||||| Sbjct 9520 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 9579 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | || |||||||| |||| || Sbjct 9580 TGAAGTCAAAAGGGTTTTCTG 9600 >seq206962 Length=5195 Score = 102 bits (112), Expect = 7e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 3817 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 3758 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 3757 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459775200868000