Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value SEQ88044 423 1e-113 seq147302 116 3e-21 >SEQ88044 Length=16043 Score = 423 bits (468), Expect = 1e-113 Identities = 699/1000 (70%), Gaps = 14/1000 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAG--GAAG-TTCATACAG 107684 ||||| |||||||||| || ||| || ||| || | |||| |||| ||||| || Sbjct 1057 TACCTGAACATAACCAAGGATTGTCAGAACTTTAAAG---AAAGCAGAAGATTCATTGAG 1113 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 |||| |||||| |||| || | ||||||| ||||| || || |||||| ||||||| Sbjct 1114 TTCCACCTGAGTGAAGAGGAAGAAAACTTCCCTATTGCTTATTCCATGGTGATCCATGAA 1173 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 ||||| || | |||||| || | || || || | | ||| ||||||||| |||| ||| Sbjct 1174 AAGATCGAGATGTTTGAAAGGTTATTGAGATCCATCTTTGCTCCTCAGAACGTATATTGT 1233 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTT--CAAAGAGGCGGTCAAGGCCATTATTT 107862 ||||||||||| || || || || ||||| |||| || || || |||||||| | Sbjct 1234 GTCCACGTGGACAGCAAATCTCCCGA-ACTTTTCCAAAAAGCCGTTC-AGGCCATTGCCT 1291 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 |||||||| |||||| || |||| |||| || ||||| |||||||| |||| Sbjct 1292 CCTGCTTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGCGTGGTCTATGCCTCTTGGT 1351 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 |||| || |||||||| |||||||| ||| | ||| |||| || ||| |||| |||| Sbjct 1352 CCAGGGTCCAAGCTGATCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTGCGTTGGA 1411 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 |||| | ||||| || || ||||| || ||||| || ||||| || | ||||| |||| Sbjct 1412 GGTACCTCCTGAACACCTGTGGGACCGATTTCCCTATCAAGACGAACACAGAGATTGTCC 1471 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102 ||||| || || |||| || || |||| |||||||| ||| ||| || | | Sbjct 1472 GAGCCCTAAAACTGCTGAACGGGAAAAACAACATGGAGTCCGAGAAACCATCATTCTATA 1531 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA 108162 |||| || ||||||||||||| | | || ||||| | | | || |||| | || Sbjct 1532 AAAAGAACCGCTGGAAATACCACCACGAAGTGACCAATAGCATCATCCAGACCAAGATGA 1591 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 ||| ||| || || | || | |||||| ||| || |||||||| | |||| | Sbjct 1592 CAAAGAGCCCCCCTCCCCAAAAGTCTCCCATGCACACTGGCAATGCCTACATCGTGGTCA 1651 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | | | |||||||| || |||| || |||| | || | || | || ||| Sbjct 1652 CCAGGGAGTTTGTCCAGCACCTCTTCGAGGACCCGACCGCCAGGCGCTTGATCGAGTGGT 1711 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA 108342 ||| || || || ||||| || || || |||||||||||| | || || ||| | Sbjct 1712 CCAAGGATACGTACAGCCCGGATGAGCATCTCTGGGCCACCTTGCATCGGATGCCGGAGG 1771 Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 |||| ||||| || ||| | | ||| ||| || || ||||||||| || || ||| Sbjct 1772 TGCCAGGCTCAGTCCCTTCCAATGACAAATATGACCTCACAGACATGAACGCTATTGCCC 1831 Query 108403 GGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC- 108461 |||| || |||||| ||| || || || |||||| ||| || ||||| || || Sbjct 1832 GGCTGGTAAAGTGGTCCTACATTGAAGGGGACATCAGCAAGGGAGCCCCTTA--CAGCCA 1889 Query 108462 -TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGAT 108520 || |||||| | | ||| |||| ||||| | || || || || || |||| | Sbjct 1890 GTGTTCTGGAGCCTACCGGCGGGCAGTCTGCGTGTATGGATTTGGAGATCTCCCCTGGCT 1949 Query 108521 TCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCT 108580 ||| | || |||||||| || |||||||| ||||| || || || || |||| | Sbjct 1950 ACTCTCACAGCACCACCTCTTTGCCAACAAGTTCGACCCCAGCGTTGACGACTACGTGAT 2009 Query 108581 GCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 ||||| || |||||||| || || | |||||||||||| Sbjct 2010 CCAGTGTTTGGAAGAGTATCTGCGCTACAAGGCCATCTAT 2049 >seq147302 Length=2612 Score = 116 bits (128), Expect = 3e-21 Identities = 227/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||| || |||||||| || || || |||| || | || ||| | | Sbjct 1926 AAGAAGAAGCAGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATGC 1867 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| | || ||| || || | ||||| ||||||||| ||||| | || || || Sbjct 1866 TTGAGAGACTTCTGAGAACCATATATGCTCCTCAGAACTATTACTGCATTCATGTTGACA 1807 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| ||||| | || || |||| ||| || || || | |||| Sbjct 1806 AAAAGTCCCCAGAGTCTTTCTTGGCAGCTGTAAAGGGGATTGCATCATGTTTTCATAATG 1747 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||||| ||||| | |||| || || ||||| || ||| | | || ||||||| Sbjct 1746 TCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCTG 1687 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 |||| ||||| || |||| | || | ||| ||| |||||||||||| | ||| Sbjct 1686 ACCTCAACTGCAT-GAAGGATCTCTATAGGAGGAATGTGAGCTGGAAGTACTTAATCAAT 1628 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 ||||| | || ||||| || || |||||| Sbjct 1627 CTCTGCGGTATGGATTTCCCAATCAAAACCAAT 1595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346259526282120