Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq387423 120 4e-22 SEQ67274 93.3 5e-14 seq206962 86.0 8e-12 seq149020 84.2 3e-11 >seq387423 Length=3253 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || |||||||| || ||||| ||||| || || || || | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| || || || || || ||||||||||||||||| ||||||||||| | Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 33724 C 33724 | Sbjct 2781 C 2781 >SEQ67274 Length=15135 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | ||| || || || || || || ||||||| || | ||| || Sbjct 14546 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 14487 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||||| || || | || || |||||||||||||| || |||||||| ||| Sbjct 14486 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 14427 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| || || Sbjct 14426 ACCACTCTTTCACC 14413 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| |||||||| || || |||| |||| || ||||| ||||| || ||| | Sbjct 10750 CACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGG 10691 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 |||||||||||||| || ||||||| || ||||| Sbjct 10690 GTATTGGATTGGGAAGATGACAAATCGATGGGGATT 10655 >seq206962 Length=5195 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 3832 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 3773 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 3772 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 3718 >seq149020 Length=4682 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 90 CACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 149 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || || ||||| ||||| Sbjct 150 GTATTGAATAGGAAAAATGACAAA 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626090811806400