Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq387423 129 5e-25 seq206962 89.7 5e-13 >seq387423 Length=3253 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||| ||||||| |||||||| ||| Sbjct 2663 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 2722 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| | ||||| || ||||||||||| ||||| || || || ||||||||| Sbjct 2723 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 2782 Query 11774 ACTACTCTTTCTCC 11787 ||||| | ||| || Sbjct 2783 ACTACACGTTCACC 2796 >seq206962 Length=5195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| || | |||||||||||||||||||||||| || ||||| || || || || Sbjct 3813 TAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTGGAAG 3754 Query 11960 CCATAGAAACATCGTGCCTCTG 11981 ||||||||||| ||||| |||| Sbjct 3753 CCATAGAAACAGCGTGCTTCTG 3732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465752421627200