Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value SEQ41016 118 1e-21 seq387423 114 2e-20 SEQ67274 98.7 1e-15 seq149020 93.3 6e-14 seq206962 86.0 8e-12 >SEQ41016 Length=11947 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || |||| | | | | ||| ||||| |||||||||||||| || Sbjct 1535 TTATTTTTTATTAAATGCTTCTAGCAAACGGAGCAGGTGCAAAAACAGATTGATGATGTC 1594 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| || | |||||| | |||| | ||| ||||| || |||||||| || |||| | Sbjct 1595 CAAATAAAGATTGATTGCAGCTAGTATATATTCTTCCGGAGAGAGCTTGTGCATTAATTG 1654 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || || |||||||| || ||||| ||||| | ||| || || ||||| | | ||| Sbjct 1655 ATGAGTATCATAGATGATAAATCCACAGAACAGAAGCGCTCCTGCAGCAGCAAATAGCAG 1714 Query 9407 CTCCACTGTTTCA 9419 ||| ||| ||||| Sbjct 1715 CTCTACTATTTCA 1727 >seq387423 Length=3253 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||||||||| | || || ||||| || ||||| ||||| || || || || | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 36300 C 36300 | Sbjct 2781 C 2781 >SEQ67274 Length=15135 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||| ||||| || || || || ||||||| || | ||| || Sbjct 14546 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 14487 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||||| ||||| | ||||| ||||| |||||||| || || ||||| ||| Sbjct 14486 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 14427 Query 36302 ATAAGTCTCTCTCC 36315 | | ||| || || Sbjct 14426 ACCACTCTTTCACC 14413 >seq149020 Length=4682 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| ||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 90 CACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 149 Query 36715 ATATTGAATTGGAAAAATAACAAA 36738 |||||||| |||||||| ||||| Sbjct 150 GTATTGAATAGGAAAAATGACAAA 173 >seq206962 Length=5195 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 36409 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 ||| ||| ||| |||| || |||||||| | | |||||||||||| ||||||||||| Sbjct 3832 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 3773 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 3772 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654278226999200