Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq387423 138 1e-27 SEQ67274 98.7 9e-16 seq206962 89.7 5e-13 >seq387423 Length=3253 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||||||||||| ||||| || || |||||||| ||||| |||||||||||||| | Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 14014 CTATTAATCGTTCTCC 14029 ||| || ||||| || Sbjct 2781 CTACTACACGTTCACC 2796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| |||||||||| | || | |||||||||||||||||||| ||| Sbjct 1182 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 1241 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||| || ||||| |||||||| |||||||| || Sbjct 1242 TCCAGAGAGATATTCTCCATAAAGTCAAATGGGTT 1276 >SEQ67274 Length=15135 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 14546 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 14487 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||||||||| || ||||| | || || ||||| ||||| || || ||||||||||| Sbjct 14486 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 14428 >seq206962 Length=5195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 14127 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || |||| Sbjct 3831 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 3774 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | ||||| || ||||| || ||||| || || | ||||| | ||||||||| Sbjct 3773 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476889329492000