Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq387423 132 5e-26 SEQ67274 93.3 4e-14 seq206962 89.7 5e-13 >seq387423 Length=3253 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||||||||||| || || || || |||||||| ||||| |||||||||||||| | Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || ||||| || Sbjct 2781 CTACTACACGTTCACC 2796 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| |||||||||| | || | |||||||| ||||||||||| ||| Sbjct 1182 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 1241 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||| || ||||| |||||||| || ||||| || Sbjct 1242 TCCAGAGAGATATTCTCCATAAAGTCAAATGGGTT 1276 >SEQ67274 Length=15135 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 14546 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 14487 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||||||||| || || || | || || ||||| ||||| || || ||||||||||| Sbjct 14486 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 14428 >seq206962 Length=5195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 13915 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || |||| Sbjct 3831 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 3774 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || ||||| || ||||| ||||| | ||||||| |||||| || Sbjct 3773 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475756870423200