Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq252873 93.3 3e-14 >seq252873 Length=5941 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||| || | ||||| ||||| | || || | || |||| || Sbjct 1230 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCCAGCTG 1171 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 |||||||||||| |||| | ||| ||||||| || | ||||| || || |||| Sbjct 1170 TTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 1111 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||||| | ||| ||||||| | ||| || || | || || || || ||||| Sbjct 1110 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 1051 Query 43086 TAGAGTTTTCACAAAAATTTGCATTTTCT 43114 | || |||||||| || |||||||||| Sbjct 1050 CAAGGTCTTCACAAAGATCTGCATTTTCT 1022 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| |||| ||| |||||| || | ||||| ||||| | || || | || ||| Sbjct 1463 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCC 1404 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||||||||| |||| | ||||||||| | || | ||||| || || | Sbjct 1403 AGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGG 1344 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | ||| ||||||| | ||| || |||| || || || || Sbjct 1343 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTCTTG 1284 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | || |||||||| || ||||| Sbjct 1283 CCGGTCAAGGTCTTCACAAAGATCTGCAT 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379169357216040