Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq252873 87.8 2e-12 >seq252873 Length=5941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| || | ||| | || || || || || |||||||| ||| | |||| Sbjct 1242 ACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCC 1183 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || ||||| || ||| ||||||| | |||||||||||||| |||||||| || Sbjct 1182 ATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTT 1123 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || || | | || | ||||| |||| || || || | || | Sbjct 1122 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 1063 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| || || || || || ||||| Sbjct 1062 GGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504014269041600