Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq387423 116 3e-21 seq4176 91.5 1e-13 seq206962 89.7 4e-13 >seq387423 Length=3253 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| || |||||||| || Sbjct 2663 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 2722 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||| | ||||| || || ||||| || |||||||||||||| ||||| ||| Sbjct 2723 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 2782 Query 13295 ATCAACCTTTCACC 13308 | | | |||||| Sbjct 2783 ACTACACGTTCACC 2796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || ||| | |||| ||| || | || |||||| || || || || || ||||| |||||| Sbjct 2130 TTGTTAAAACCTAGTTCCAGGATCAGTCTGTCTGCTACGAATTCAATATACTGCTTCATT 2189 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| ||||||||||| |||| |||||||||| |||||||| ||||| Sbjct 2190 AAAATGCAGTTCATTCCGATTAGGTTTACAGGCAATGCTTCTGTCAAAAA 2239 >seq4176 Length=7426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 5410 ACGATAGAGATGTACCTGTGAACGCTCATAACAGTGACGAAAAACATTCCACTGTAAAAC 5469 || |||| | ||| |||| || ||| || | ||||| ||| ||||| |||| | | Sbjct 4470 ACAATAGCTAGGTATCTGTCAATGCTTATGATAGTGATGAAGAACATGCCACCAAAGAGG 4411 Query 5470 CCCACATAATAAAATCCAGACACTATTTTACACGTAAAATTTCCAAATATCCACTGATCT 5529 |||||| |||| || ||| ||||||| || ||||| ||||||| | |||| | || | Sbjct 4410 CCCACAGAATAGAAAGAAGAAACTATTTGGCATGTAAAGTTTCCAAGTGTCCAATCATGT 4351 Query 5530 AACTGATAATGTATTTGAAATGGAAATGACATAACAAATAACAGATCGGATATGGCTAAA 5589 | |||| ||| |||| || || ||||| | |||||||| ||||| | | Sbjct 4350 ATAATATAAAAAGCCCAAAAAGGAAGAGAAATCACAAAAAGAAGATCGGAGATGGCCAGA 4291 Query 5590 TTTATTAAAAATATATCAGT 5609 || | |||||||||||||| Sbjct 4290 TTAAAAAAAAATATATCAGT 4271 >seq206962 Length=5195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 3817 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 3758 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 3757 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 3719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428495925158760