Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value SEQ43688 176 1e-38 seq252873 163 7e-35 seq291000 149 1e-30 SEQ67274 93.3 1e-13 seq387423 84.2 5e-11 >SEQ43688 Length=11187 Score = 176 bits (194), Expect = 1e-38 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| |||||||||||||| || || ||||| || || || || || || || ||||||| Sbjct 3870 GAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAATATTCTTCA 3811 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct 3810 TCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTTCACTATGT 3751 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||||| | ||||| || || || ||| | ||||||||||||| Sbjct 3750 TTACTTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACAAG 3706 >seq252873 Length=5941 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || |||||||| || ||||| Sbjct 1484 ATGCCGCCTCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 1425 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || ||||| || |||||||||||||||||| Sbjct 1424 GAGAGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGA 1365 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 1364 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCC 1305 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| || || | || || ||||| |||||||| Sbjct 1304 ACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1255 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 1256 ATGCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1197 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || ||||| || ||||| || |||||||| ||||| ||| Sbjct 1196 GAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGA 1137 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| ||||| || || Sbjct 1136 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCC 1077 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || | || || ||||| ||||||||||| Sbjct 1076 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 1024 >seq291000 Length=249 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 230 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 171 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || ||||| || |||||||| ||||||||| Sbjct 170 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 111 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 110 GGAATGCCTTCCTTATCCTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 51 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || ||||| |||||||| Sbjct 50 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 1 >SEQ67274 Length=15135 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| || ||||| | ||||| || || || |||||| | ||||||||| Sbjct 12524 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 12583 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||| |||||||||||| | |||||||| || || || Sbjct 12584 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACAT 12624 >seq387423 Length=3253 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 269485 ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAA 269544 ||| || | ||| || || ||| |||||||||||||| || | ||||| || |||| Sbjct 1289 ATACAAGGCTGAGAACCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAA 1230 Query 269545 TTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGA 269604 ||||| || ||||| ||| | | ||||| | |||||||| ||||| | | | ||| Sbjct 1229 CTTCTTTGAAAAGCGTGTAGGAGAATATCAAAGGATGGGTGTGATGTCAAGTCCTGCAGA 1170 Query 269605 AAATATTTTCACTACAGATGCAGAATTCTAA 269635 ||| |||||| |||||||| |||||| Sbjct 1169 TAATTCATTCACTTTGGATGCAGATTTCTAA 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144414960013040