Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq238723 138 2e-27 seq127711 131 2e-25 seq150737 86.0 9e-12 >seq238723 Length=2656 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 |||| | || ||||| | || || || | ||||| || |||||||| |||||||| Sbjct 699 TTGCTGTGTTCACGATTCGGAAGCCGGCGGCACCGCCAAAAGTGCTGGGCTTCCAGTATT 640 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | |||||||||||| |||| ||| ||| || || | ||| || |||||||||| ||| | Sbjct 639 CGGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCTA 580 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||||||| || |||||| |||||| || ||| |||||||| | |||| | | | Sbjct 579 TCATGCTCTGTCCAAAGATGCCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGAAGA 520 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCA 8956 |||||| ||| || |||||||| || || || |||| |||| Sbjct 519 ACTCCAGAGCATCAATGTCTCCATACAGCGCTTCCAGTTTGGCA 476 >seq127711 Length=14987 Score = 131 bits (144), Expect = 2e-25 Identities = 175/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCT-CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGA 8799 || ||||| |||| ||||| ||| || || || || || || |||||||| | || || Sbjct 14495 TTCACGATGTCAAAGCCCAC-TCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGA 14437 Query 8800 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCT 8859 ||||||||| || |||| || ||||| | ||| || |||||||| || || | ||| | Sbjct 14436 GCAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGT 14377 Query 8860 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCA 8918 |||||| |||||||| || || ||||||| || |||||| | | ||| || |||| Sbjct 14376 CTCACCAAAGATGGCTCCAGGGCGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCA 14318 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || || ||||| || || | ||||| ||||| ||||| ||||| ||||| Sbjct 14317 TAGCTTCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 14260 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||| ||| |||| ||| ||||||||| ||||||| || || || || || || Sbjct 11547 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGGACGTCACAGACC 11488 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| || || || |||| |||||| Sbjct 11487 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 11428 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || | || || | | ||| ||||||||||| | Sbjct 11427 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCT 11368 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||||| || | || ||||||||||| || ||||| ||||| Sbjct 11367 GCCTGAGTTTCTTTCACAGTAGGCGGATACATTTCTCCATCAATCATCTG 11318 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || || ||||| |||||| | || ||| | | ||| ||| | || Sbjct 10191 CTTACCCCATGCCCAAGACCTTTTGTGAAGCCTGGTCCTTTCTGAATATCTGTCTTGAAG 10132 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 10131 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 10072 Query 10149 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 10178 ||| |||| | |||| || |||| ||||| Sbjct 10071 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 10041 >seq150737 Length=878 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9463 TGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTA 9522 |||||||| |||| | ||| ||||| | || || || |||||||||||| | Sbjct 250 TGCCAGTGGTACAGCTGGTTGAACTCCAGAGCGATGCGGTTCTGGTACTGGAACTGGGCC 191 Query 9523 CCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCCGCTGAGCTGCTGAACA 9582 ||||| || || |||||| |||| || || |||||||||||||||||| ||||| || Sbjct 190 CCAAACAGAAGCTCGGGCGCAAACGTCAGCTTAAAGTGGTAGCCGCTGAGATGCTGGACG 131 Query 9583 TACTGCGTCACGATAATGTTGATTGTTTCCCC 9614 || | | | || ||| ||||| || || || Sbjct 130 TAATCCTCAATGACAATTTTGATCGTCTCACC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704332281627200