Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq252873 116 3e-21 seq291000 113 4e-20 >seq252873 Length=5941 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||| | || || ||||| || | ||| || ||| Sbjct 1481 CCGCCTCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1422 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||||||||| ||| ||||||| | || || ||||| |||||| Sbjct 1421 AGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGA 1362 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || |||||||| | | ||||| | | || || Sbjct 1361 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 1302 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||||||||||||||||| Sbjct 1301 TCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATGC 1253 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | |||| | ||| ||||||||||| ||| Sbjct 1223 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCG 1164 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || |||||||| |||||||| ||||| ||||| | || || |||||| Sbjct 1163 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1104 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | | || || || | |||||||| || || || | || Sbjct 1103 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 1044 Query 94991 TTCACAAAGATCTGCAT 95007 ||||||||||||||||| Sbjct 1043 TTCACAAAGATCTGCAT 1027 >seq291000 Length=249 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | ||| | ||| ||||||||||| ||| Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCG 138 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || |||||||| |||||||| ||||| || || | || || |||||| Sbjct 137 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTCGCCTTG 78 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | |||||| | | || || || | |||||||| || ||||| | || Sbjct 77 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 18 Query 94991 TTCACAAAGATCTGCAT 95007 ||||||||||||||||| Sbjct 17 TTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445638548896800