Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq150878 187 4e-43 seq234125 179 6e-41 seq362971 170 3e-38 seq217199 170 3e-38 seq225621 168 1e-37 seq327329 163 4e-36 SEQ38505 161 2e-35 seq339313 159 5e-35 seq165803 123 4e-24 >seq150878 Length=10667 Score = 187 bits (206), Expect = 4e-43 Identities = 200/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | |||| ||||||||||||||||| ||||| ||||| |||| Sbjct 9253 CGCAAAGCGCCACCGGAAAG-TCTTGCGAGATAACATCCAAGGCATCACTAAGCCCGCTA 9311 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||||||||| ||||| |||||| |||| || ||| ||||||| |||| Sbjct 9312 TCCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCCGGCTTGATCTATGAGGAGA 9371 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| ||||||| | | || |||| ||||| | || |||| Sbjct 9372 CTCGCGGGGTGCTAAAGGTCTTCCTTGAAAATGTCATCCGCGATGCCGTGACTTACACCG 9431 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || ||||| ||||| || |||| Sbjct 9432 AGCACGCCAAGAGAAAGACTGTGACTGCCATGGATGTGGTGTATGCTTTGAAGCGCCAAG 9491 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | || || ||||| Sbjct 9492 GCCGTACTCTGTACGGATTTGG 9513 >seq234125 Length=2629 Score = 179 bits (198), Expect = 6e-41 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| ||||| ||||||||||| ||||| || || |||||||| ||||| Sbjct 972 CTCCGCGATAACATTCAAGGCATCACCAAGCCTGCTATACGCCGCCTGGCTCGCCGTGGA 913 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| | || || ||| | || ||||||| ||| | ||| ||||| ||||| Sbjct 912 GGTGTGAAACGTATTTCGGGCTTGATTTACGAAGAGACTCGCGGTGTACTGAAGGTCTTC 853 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||| | |||||| | ||| ||||||||||| || || |||||||| Sbjct 852 TTGGAGAACGTTATTCGAGATGCTGTGACCTACACCGAGCACGCGAAGCGAAAGACTGTA 793 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| |||||||| ||||| |||| | || |||||||| Sbjct 792 ACTGCTATGGATGTTGTTTATGCCTTGAAACGCCAAGGTCGTACTCTGTACGGTTTTGG 734 >seq362971 Length=671 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || |||||||| |||||||| ||| ||||||| || || Sbjct 244 CTCCGCGATAACATCCAAGGGATTACCAAGCCGGCTATCCGCCGTTTGGCTCGCCGCGGA 185 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||||||| | |||||||||| |||| || |||||| |||| Sbjct 184 GGCGTGAAGCGAATTTCTGGATTGATTTATGAAGAGACCCGTGGAGTCTTGAAGGTCTTT 125 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| | ||| || |||||||||||| | ||||| || Sbjct 124 CTAGAGAACGTGATCCGCGATGCTGTGACCTACACGGAGCACGCTAAAAGGAAGACCGTG 65 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || || || |||| || ||||| |||| | || || ||||| Sbjct 64 ACGGCCATGGACGTGGTGTACGCGCTGAAGCGCCAAGGGCGTACCTTGTACGGCTTTGG 6 >seq217199 Length=2173 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || ||||| |||||||| || |||||||| || || Sbjct 430 CTCCGCGATAACATCCAAGGCATTACGAAGCCGGCTATCCGCCGCCTGGCTCGCCGCGGA 489 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||||||| |||| ||||||| |||| || |||||| ||||| Sbjct 490 GGCGTGAAGCGAATTTCTGGATTGATCTACGAAGAGACCCGTGGAGTCTTGAAGGTCTTC 549 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| | ||| || |||||||||||| | ||||| || Sbjct 550 CTGGAGAACGTGATCCGCGATGCTGTGACCTACACGGAGCACGCTAAAAGGAAGACCGTG 609 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || || || |||| || ||||| |||| | || || ||||| Sbjct 610 ACGGCCATGGACGTGGTGTACGCGCTGAAGCGCCAAGGGCGTACCTTGTACGGCTTTGG 668 >seq225621 Length=3982 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || |||||||| ||||| |||||| ||||||| ||||| Sbjct 2261 CTCCGCGATAACATCCAAGGCATTACCAAGCCTGCTATTCGTCGTTTGGCTCGCCGTGGG 2320 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | ||||| ||| | |||||||| | ||| | || ||||| | || Sbjct 2321 GGAGTAAAGCGTATTTCTGGCTTGATTTATGAAGAAACTCGGGGCGTACTGAAGGTGTTT 2380 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | |||||| | |||||| | ||| |||||||| || ||||| ||||| || Sbjct 2381 CTGGAAAACGTTATTCGTGATGCCGTGACCTACACCGAGCATGCAAAACGGAAGACCGTG 2440 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||| ||||| ||||||| ||||| || | | ||||| || ||| Sbjct 2441 ACTGCGATGGACGTCGTTTATGCCCTGAAACGCCAAGGTCGCACTCTCTATGGCTTCGGA 2500 Query 16694 AGTTAA 16699 | ||| Sbjct 2501 GGCTAA 2506 >seq327329 Length=3873 Score = 163 bits (180), Expect = 4e-36 Identities = 199/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| ||||||| || ||||| ||||| || || |||| Sbjct 1900 CGCAAAGCGCCACCGCAAAG-TCTTGAGAGATAATATTCAAGGCATCACTAAACCCGCTA 1842 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||||||||||||||| || |||||| ||||||| ||| |||| || |||| Sbjct 1841 TCCGCCGTTTGGCTCGTCGTGGTGGGGTGAAGCGTATCTCTGGCTTGATCTACGAGGAGA 1782 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | || ||||||| | | || |||| ||||| | || |||| Sbjct 1781 CTCGAGGGGTGCTAAAAGTCTTCCTTGAAAATGTCATCCGCGATGCCGTGACTTACACCG 1722 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || | |||||||| || |||||||| | || ||||| |||||||| |||| Sbjct 1721 AGCATGCCAAGAGAAAGACTGTGACTGCCATGGATGTGGTGTATGCCTTGAAACGCCAAG 1662 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | || || ||||| ||||| Sbjct 1661 GACGCACTCTGTACGGATTTGGTGGTTAA 1633 >SEQ38505 Length=7946 Score = 161 bits (178), Expect = 2e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||| | || || | | || |||||||| ||||| || || ||||| ||||| || | Sbjct 3667 CGCTAAGAGGCACCGTAAGGTC-CTTCGAGACAACATTCAGGGCATCACGAAGCCCGCCA 3609 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||||| ||||| ||||| |||||| |||| || | |||||||||||| Sbjct 3608 TTCGCCGCTTGGCTCGCCGTGGGGGAGTGAAGCGTATCTCCGGGCTCATCTATGAAGAGA 3549 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || |||||| ||||| | ||| ||||||| ||||| | |||||| | Sbjct 3548 CTCGAGGCGTCTTGAAGGTCTTCTTGGAGAATGTTATCCGCGATGCGGTTACCTATACTG 3489 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || || | ||||| || || ||||||| | || ||||| |||||||| |||| Sbjct 3488 AACATGCCAAGAGAAAGACGGTGACGGCCATGGACGTAGTTTATGCTTTGAAACGCCAAG 3429 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | || | | ||||||||||| |||| Sbjct 3428 GTCGCACCTTGTATGGTTTTGGTGGTTA 3401 >seq339313 Length=273 Score = 159 bits (176), Expect = 5e-35 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||| || Sbjct 28 CTTCGCGATAACATCCAGGGCATCACCAAGCCTGCGATCCGCCGTCTGGCTCGTCGCGGA 87 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || || |||| || || | ||| | || ||||| ||||| Sbjct 88 GGCGTGAAGCGCATTTCGGGCCTGATCTACGAGGAAACTCGCGGCGTGCTGAAGGTCTTC 147 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || ||| ||||||||||| || | ||||| ||| Sbjct 148 CTGGAGAACGTGATTCGCGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 207 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || ||||| || || ||||| Sbjct 208 ACCGCCATGGACGTGGTCTACGCCTTGAAGCGCCAGGGCCG 248 >seq165803 Length=2917 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || ||||| || || || || |||||||| || || Sbjct 1074 CTCCGGGATAACATCCAAGGCATTACGAAGCCCGCCATTCGCCGCCTGGCTCGGCGCGGC 1015 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || | |||| || || | || | ||| ||||| ||||| Sbjct 1014 GGCGTGAAGCGAATTTCGGGGCTCATCTACGAGGAAACGCGGGGCGTTCTGAAGGTCTTC 955 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | || ||||||||||| || | ||||| ||| Sbjct 954 CTAGAGAACGTGATCCGCGACGCGGTGACTTACACCGAGCACGCCAAGAGGAAGACGGTC 895 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || |||||||| | ||||| || | || ||||||||||| Sbjct 894 ACGGCCATGGATGTGGTCTACGCCCTCAAGCGTCAAGGCCG 854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78642385352340