Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq387423 123 3e-23 SEQ67274 107 2e-18 seq206962 91.5 2e-13 SEQ61574 82.4 9e-11 >seq387423 Length=3253 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| || || || ||||| || ||||| ||||| || || || || | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || || || || |||||||||||||||||||| ||||||||||| | Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 33446 C 33446 | Sbjct 2781 C 2781 >SEQ67274 Length=15135 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| ||||| ||||| || || || || ||||||| || | ||| || Sbjct 14546 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 14487 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||||| || || | ||||| |||||||||||||| || |||||||| ||| Sbjct 14486 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 14427 Query 33448 ATAAGTCTCTCTCC 33461 | | ||| || || Sbjct 14426 ACCACTCTTTCACC 14413 >seq206962 Length=5195 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| ||| ||| |||| |||||||| || | | |||||||||||| ||||||||||| Sbjct 3832 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 3773 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || ||||| ||||| || || |||||||| | || || || | ||||||||| | Sbjct 3772 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCTTGGCT 3713 Query 33675 AAATCGTTCCGCC 33687 ||||| ||| || Sbjct 3712 GAATCGCTCCACC 3700 >SEQ61574 Length=9803 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 32960 AAAAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGAGACATAACTCCCATTTTTT 33016 |||||||| ||||||||| ||| | ||||| | ||| ||||||||| | | | || Sbjct 9460 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTCGGACATAACTGCAAAATGTT 9519 Query 33017 GGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCA 33076 | ||||| || | | || || ||||| ||||||||||||| || || ||||||| Sbjct 9520 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 9579 Query 33077 TGAAATCAAACGGATT 33092 |||| ||||| || || Sbjct 9580 TGAAGTCAAAAGGGTT 9595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619261065680800