Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq252873 98.7 9e-16 seq245910 96.9 3e-15 >seq252873 Length=5941 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||| || | || | ||| |||||||| ||||||||||| ||| Sbjct 1482 GCCGCCTCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1423 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || ||||| ||||| || |||| | | ||| || || ||||| Sbjct 1422 GAGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGG 1363 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || ||| ||| ||| | Sbjct 1362 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 1303 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| | || || || || ||||||||| Sbjct 1302 CTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 1254 >seq245910 Length=872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 |||||||||| ||| | ||||| || |||||||| ||||| || ||||| || || ||| Sbjct 834 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 775 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTC 145791 | |||||| | |||||||||||||||||| || || |||||| ||| | ||| Sbjct 774 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGACTC 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469219782259200