Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq252873 105 6e-18 >seq252873 Length=5941 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| | || || |||||| || ||||| || Sbjct 1451 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCCAGCTGTTTGCCG 1392 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | |||||| || |||||||||||||| ||||| ||||| || Sbjct 1391 GCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1332 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | || |||||||||| || Sbjct 1331 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTC 1272 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 1271 TTCACAAAGATCTGCATG 1254 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| | || | || || | ||| | || || || || || |||||||| ||| Sbjct 1256 ATGCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1197 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || ||||| || || |||| || | ||| || || ||| Sbjct 1196 GAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGA 1137 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | |||| ||||||| ||| || Sbjct 1136 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCC 1077 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||||| || || ||||| |||||||| Sbjct 1076 ACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417710510728560