Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq212999 158 2e-33 seq391991 138 2e-27 seq245910 136 7e-27 seq456943 98.7 2e-15 SEQ67274 84.2 4e-11 >seq212999 Length=2373 Score = 158 bits (174), Expect = 2e-33 Identities = 169/217 (78%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 244321 CCCCT-TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCAGC 244378 ||||| |||||||||||||||||| ||||||| ||||||| || | | | |||| ||||| Sbjct 1852 CCCCTCTGCTGACGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGG-CCAGC 1794 Query 244379 TTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG 244438 | ||||| | || || || |||||| ||||||||||||||| || ||| | | || Sbjct 1793 TCGCAGCTGGCCTCCAGCGCCCAGTAGTAAATGGTCTCGAAGATCTGCTGGTTGA-GCCG 1735 Query 244439 C-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | |||||| | || |||||||| || ||| | |||||| |||||||||| ||||| Sbjct 1734 CTGGGCCTGGGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTG 1675 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| |||||||||||||| | || ||| ||||||| Sbjct 1674 CACCCCGATGCCGATGGGGCGATGGCGCCGGTTGGAG 1638 >seq391991 Length=799 Score = 138 bits (152), Expect = 2e-27 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || |||||||||||| ||||||||||| || | ||||||||||| || ||||||| Sbjct 305 ACCCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGC 246 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | || ||||||| ||| | |||||||||| Sbjct 245 TCTTCCTTCCCGGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCCAAGTGCCAGGGC 186 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| || | ||| ||||| Sbjct 185 TCCAGGTAGATGGCAAAGGCCCCGGG 160 >seq245910 Length=872 Score = 136 bits (150), Expect = 7e-27 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||| ||||| || ||||||||||||||||| ||||||||||||| Sbjct 860 CCACCTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 801 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| ||||| Sbjct 800 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 741 Query 244824 CCCCGGTCTC 244833 ||| ||||| Sbjct 740 TCCCCGTCTC 731 >seq456943 Length=203 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| || |||||||||||||||| ||||| | |||| || |||||||| | | || Sbjct 138 GATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGAC 79 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| |||| |||| |||||| | | | Sbjct 78 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTCGGGAATCTC 19 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 18 CGGGATGTTCTG 7 >SEQ67274 Length=15135 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || ||||| || ||||||||||| || || || || |||| || | Sbjct 14423 TGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCAGCCATATTTT 14482 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||||||| ||| | || ||||| || || || ||||| || ||||| || ||||| | Sbjct 14483 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAATGAACTTATTAGCAGAG 14542 Query 42826 ACGA 42829 | || Sbjct 14543 ATGA 14546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 938751308868800