Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq252873 127 2e-24 >seq252873 Length=5941 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || ||||| | ||| Sbjct 1238 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 1179 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||||||| | || |||| |||||| ||||||||||| ||||| || || Sbjct 1178 TCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 1119 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || ||||| || | || | |||| Sbjct 1118 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 1059 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||||| || || || || || |||||||| Sbjct 1058 TTGCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 1024 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | || ||||| | ||||| ||||| |||||| Sbjct 1451 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCCAGCTGTTTGCCG 1392 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||| || || |||||||| ||||| || || || || || ||| Sbjct 1391 GCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1332 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| |||| || | ||||||||||||||| || Sbjct 1331 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTC 1272 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 1271 TTCACAAAGATCTGCAT 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496688276807200