Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq252873 107 2e-18 seq245910 98.7 1e-15 seq212999 89.7 5e-13 >seq252873 Length=5941 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||||| || ||||| || | || | | | |||||||| ||||||||||||||| Sbjct 1482 GCCGCCTCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1423 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || ||||| |||| | |||| || | |||||| || ||||| Sbjct 1422 GAGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGG 1363 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||||||| | | |||||| Sbjct 1362 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 1303 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || |||| || || ||||| ||||||||| Sbjct 1302 CTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 1254 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| | || ||||| || | ||| | | | |||||||| || |||||||||||| Sbjct 1254 GCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1195 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || ||||| |||| | |||| || | ||| || || ||||| Sbjct 1194 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGG 1135 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||||||| | | |||||| Sbjct 1134 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCAC 1075 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || ||||| |||||||| Sbjct 1074 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1027 >seq245910 Length=872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 153641 GTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATT 153700 ||||| ||||||||||| ||||||||||||||| || ||| ||||| || ||||| || Sbjct 841 GTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 782 Query 153701 GCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 ||| || || ||||| | ||| ||| |||||||||| || Sbjct 781 GCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 743 >seq212999 Length=2373 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 153302 GGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 |||||| |||||||| ||||| ||||| | ||||| ||||| ||| ||| || | || Sbjct 1800 GGCCAGCTCGCAGCTGGCCTCCAGCGCCCAGTAGTAAATGGTCTCGAAGATCTGCTGGTT 1741 Query 153362 GAGAACGGCCGCTTCTTCG--CTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCC 153419 ||| | || | || | |||||| | || | ||||| || | |||||||||||| Sbjct 1740 GAG--CCGCTGGGCCTGGGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCC 1683 Query 153420 AGACCCTGGATACCGACGCCGATGGGTCGATG 153451 || ||||| | |||| ||||||||| ||||| Sbjct 1682 AGGCCCTGCACCCCGATGCCGATGGGGCGATG 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493325891313600