Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq252873 109 5e-19 seq245910 107 2e-18 >seq252873 Length=5941 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| || || || ||||| ||| | ||||| | Sbjct 1241 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA 1182 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || |||||| | ||||||||||||||| ||||| |||||| Sbjct 1181 TCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 1122 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 1121 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 1062 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||||| || || ||||| |||||||| Sbjct 1061 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 1027 >seq245910 Length=872 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||| | | | |||| ||| ||||||| |||||||||||||||||||||| |||| Sbjct 856 CTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCC 797 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACG--GTCCC 146781 || || | ||||| || | |||||||| |||||||||||||||||| | ||||| Sbjct 796 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCC 737 Query 146782 C 146782 | Sbjct 736 C 736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472687142891200