Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq127711 156 6e-33 seq238723 127 3e-24 >seq127711 Length=14987 Score = 156 bits (172), Expect = 6e-33 Identities = 206/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || ||||||||||| || |||||| || | | || || ||||||||||| Sbjct 14543 GGGCAGCCCTTCACATTATTGCAGATGAGGCTTTGGAGTGAGGCTGTATTCACGATGTCA 14484 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || || || || || || || |||||||| | || ||||||||||| || Sbjct 14483 AAGCCCACTCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACATTT 14424 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || |||||||| || || || ||| ||||||| |||||| Sbjct 14423 CCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTCTCACCAAAGATG 14364 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || || || || ||||| || | |||| ||| ||| | ||| | ||| || | || Sbjct 14363 GCTCCAGGGCGTGGCTTTTCAAC-AAGAAGAGCAGGGTATAATTCCATAGCTTCAATATC 14305 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| |||| | || ||||| || || || |||||| Sbjct 14304 TCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCT 14262 Score = 113 bits (124), Expect = 6e-20 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAAT 9550 |||||||||||||| | ||| || | |||| || ||| | | | |||| |||| Sbjct 12512 ATGGAATTGTTGTACATGAACTGCTGGTAAGTGTAGTCTTGGTTTTGGATATG--AAAAG 12455 Query 9551 CATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCT 9610 |||||||| |||| ||||||| |||||||||| |||||||| || ||||||| ||||| Sbjct 12454 TATCAGGCAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCTGCTGCTATTCTGTTCT 12395 Query 9611 GGTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTA 9668 | |||||||| || ||| ||| || | || || ||||| | || | ||| ||||| Sbjct 12394 GATACTGAAATCGCTGGTT--GAAGAGAAGTTCTGGATCAAACTTCAGTTTGAAATGGTA 12337 Query 9669 CCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || | || || || || | | || | ||| || ||||||||||| Sbjct 12336 TCCACTTAAATGTTGCACGTAGTCTTCAATCACAATCTTGATGGTTTCCCC 12286 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| ||||||| |||||||| || || || || ||||||| || ||||| | Sbjct 11532 TCATCATCCCATTCTGGGTGTTCTCCCTTAAGGACGTCACAGACCCGATTATGTTCCCGG 11473 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| | ||||| |||||||| | || || || || ||||| || || | || || Sbjct 11472 AGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAGACCTCCTGTCCTACA 11413 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG 9933 | ||| ||| | || || | | ||| | ||| | ||| | |||| || ||||| Sbjct 11412 GAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCTGCCTGAGTTTCTTTC 11353 Query 9934 ACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 || || || ||||||||||| || ||||| | ||| Sbjct 11352 ACAGTAGGCGGATACATTTCTCCATCAATCATCTG 11318 >seq238723 Length=2656 Score = 127 bits (140), Expect = 3e-24 Identities = 166/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 8934 TTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACG 8993 |||| || |||||||| || || || | ||||| || |||||||| |||||||| Sbjct 699 TTGCTGTGTTCACGATTCGGAAGCCGGCGGCACCGCCAAAAGTGCTGGGCTTCCAGTATT 640 Query 8994 CCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGA 9053 | |||||||||||| |||| ||| |||||| |||||||| || |||||||||| ||| | Sbjct 639 CGGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCTA 580 Query 9054 TGATGCTCTCACCGAAGATGGCACCG--GGACGCGGT-TTTTCGACGATGAAGCCAGTGT 9110 | ||||||| || |||||| ||| ||| ||| || || || | | ||| | | Sbjct 579 TCATGCTCTGTCCAAAGATG---CCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGA 523 Query 9111 AGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCA 9157 ||| || | ||| || | ||| ||||| || ||||||| | |||| Sbjct 522 AGAACTCCAGAGCATCAATGTCTCCATACAGCGCTTCCAGTTTGGCA 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719445520492000