Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq456943 125 1e-23 seq407597 93.3 7e-14 seq245910 89.7 8e-13 >seq456943 Length=203 Score = 125 bits (138), Expect = 1e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | ||| || | |||||| || || || | Sbjct 199 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCAATAT 140 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||||||||||||||| ||||||||||| | | |||| || |||||||| || | | Sbjct 139 GGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGA 80 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||||||||| || |||||||||||||||||| Sbjct 79 CGGTCTTCTGGGAGATCTCCCACACCGTCTTG 48 >seq407597 Length=627 Score = 93.3 bits (102), Expect = 7e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 214886 ACCGAATGCGGTGCGTGTCCCGCCAACCACTACACCGAATTTTGGAACTACCTGAACCGG 214945 ||||| ||| ||||| || | | ||||||||||| | ||||||||||||| || || Sbjct 455 ACCGAGTGCAAGCCGTGTGCCAACGAGCACTACACCGAGTATTGGAACTACCTGGACAGG 396 Query 214946 TGTCTGTACTGCGGCGTGCGATGCACAGAGCAGCAGGTGGAAAAATCGACCTGCAGCGCC 215005 ||| |||||||| || | || || | || | | ||||||| | |||||| | Sbjct 395 TGTTTGTACTGCAGCATCCGCTGTAACGACCTGGAGGTGGAGGTGGTGCCCTGCAACAAG 336 Query 215006 ACTCACAACAGAGTGTGCGAATGCAAGCCTGGCTACCAC 215044 || |||||||| |||||| | ||||| | ||||||||| Sbjct 335 ACCCACAACAGGGTGTGCCAGTGCAAAGCGGGCTACCAC 297 >seq245910 Length=872 Score = 89.7 bits (98), Expect = 8e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||||||||||||| | ||| | |||||| | |||| | ||||||||| Sbjct 838 CTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 779 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||| ||||| |||||||||||||| | |||| | ||| | || ||||| ||||||| Sbjct 778 CTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGA 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790450067892800