Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq252873 141 9e-29 seq291000 111 2e-19 >seq252873 Length=5941 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || ||||| ||||||||| | || || ||| || Sbjct 1024 AAAATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1083 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||||| || || ||||| |||| Sbjct 1084 AGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGA 1142 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || |||||||||||||| || | ||||| ||| |||||| Sbjct 1143 TCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTA 1202 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || ||| | || |||||| |||| |||||| Sbjct 1203 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGC 1254 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| | Sbjct 1255 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGC 1314 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | || ||| Sbjct 1315 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1374 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || |||||||||||||| || | ||||| ||| |||||||||| Sbjct 1375 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAAC 1434 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | || || || |||| |||||| ||||||||||| Sbjct 1435 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGAGAGGCGGC 1482 >seq291000 Length=249 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 1 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 60 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| | || || Sbjct 61 GACACCATTGAGAACG-TCAAGGCGAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 119 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || |||||||||||||| || | ||||||||| ||||||||| Sbjct 120 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 179 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || || ||| |||| || || Sbjct 180 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497213152499200