Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 253 8e-62 seq368607 100 1e-15 seq283853 98.7 4e-15 SEQ14828 87.8 7e-12 >SEQ85260 Length=18223 Score = 253 bits (280), Expect = 8e-62 Identities = 1039/1608 (65%), Gaps = 59/1608 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| | || ||||| | || || || || |||| ||| | || || Sbjct 11428 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 11487 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || ||||| || || |||||||| || ||||| || | || |||||| Sbjct 11488 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 11547 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | || | || | || || || ||||| | || ||| |||| | Sbjct 11548 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATG--AATCCCAACA 11605 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | |||||| || ||| | |||||||| | | |||||| ||| || || Sbjct 11606 ACACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGT 11665 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || ||| ||| || | | || || || ||| | | |||| Sbjct 11666 CCGATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAACCCAAGGTACAAG 11725 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | ||||| |||| | || || || ||||||||||||||| |||||||| | | Sbjct 11726 TCGAGTATAAGTGTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 11785 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATT 451330 | |||||||| |||| ||| || || | |||| ||| | || ||| |||||| Sbjct 11786 CCAAAATGAAGGAAATAGCCGAGGCTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTAATT 11844 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || |||||||| | ||||| ||||| || |||||||| || ||| Sbjct 11845 ACTGTGCCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATT 11904 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||| | ||||| | || || |||||||| || || || ||||| | || ||||| Sbjct 11905 ACAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCAATTGCCTATGG- 11963 Query 451451 CTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 | ||| || || || | ||| || || ||| | | | ||||| || ||||| Sbjct 11964 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTGCTGATCTTTGACTTGGGTGG 12023 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || |||| ||| | | | ||||||||||| | |||||||| || | || Sbjct 12024 TGGCACATTTGATGTTTCCATTTTGACTATTGAAGATGGCATCTTTGAAGTGAAATCTAC 12083 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG-GAATGGTTGA 451625 ||| ||||| ||| | || || || || |||| ||| || ||| | ||| Sbjct 12084 TGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTTGT 12143 Query 451626 AAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAG 451683 | | ||||| || || | ||| || || ||| || ||| | |||| || | Sbjct 12144 GGA--GGAATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTTCG 12200 Query 451684 ACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACTA--CT 451741 ||| || ||| | |||| ||| ||| ||| || ||||| | | | | | || Sbjct 12201 ACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTC--CTCCACCCAGGCT 12258 Query 451742 AGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTC--TTACCCGTG 451799 ||| | ||||| ||| ||||||| || ||| | |||| || |||| |||| Sbjct 12259 TCTATTGAGATTGACTCATTATTTGATGGCATTGAT--TTCTACACATCAATTACTCGTG 12316 Query 451800 CTAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTG 451853 || ||||| |||| || | || | | | |||| | ||||||| | Sbjct 12317 CTCGCTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTGG 12370 Query 451854 ATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAG 451913 | | | | | |||| |||| | |||| ||||| |||||||||| || || | Sbjct 12371 AGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAAATTAATGAAATTGTTCTGGTTG 12430 Query 451914 GAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGA 451969 | || || || || || || || || ||| | || | | |||| ||| ||| Sbjct 12431 GTGGCTCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGGA 12486 Query 451970 AAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029 ||| | ||| || ||| ||||||||||||||||||| |||||||||||||| || || Sbjct 12487 AAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAG 12546 Query 452030 GCAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGT 452088 || |||||||||| ||| || || ||||| | ||| ||||| | | ||||| Sbjct 12547 GCTGCTATTCTAATGGGTGACAAAT-CCGAAAATGTGCAAGACCTTCTGCTGCTTGATGT 12605 Query 452089 AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACG 452148 | |||| || ||||| || |||| || |||||||| |||||||| ||||| ||||| Sbjct 12606 AGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACG 12665 Query 452149 AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACC 452208 || ||||||| || | | || || || | || | | | | | ||||| Sbjct 12666 TAACACAACTATTCCCACCAAGCAAACCCAGACCTTCA--CCACCTATTCAGA--CAACC 12721 Query 452209 AG----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 || |||| | ||||||| ||| || || | || ||||| || |||||| Sbjct 12722 AGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACTAAGGACAATAATC 12781 Query 452265 AACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTG 452324 || || | ||| || | ||||| ||| || | || || ||||||| Sbjct 12782 TGCTGGGCAAGTTTGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTG 12841 Query 452325 AAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCA 452383 | | || | ||| |||||||||||||||| || ||||| | |||||| || || | || Sbjct 12842 AGGTGACATTTGACATTGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCA 12901 Query 452384 TCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGA 452442 | |||||| |||| || |||||||| |||||||| ||| || | ||||| || Sbjct 12902 -CAGGAAAA-GAGAATAAGATTACAATAACTAATGACAAAGGGCGCCTCAGCAAAGATGA 12959 Query 452443 TATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||||| ||||| | |||||||| | ||||| || ||||| Sbjct 12960 CATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGA 13007 >seq368607 Length=2412 Score = 100 bits (110), Expect = 1e-15 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || |||||||||||||| | || || || || || Sbjct 2228 GTTACAAATGCCGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCTACA 2169 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| || |||||||||||||| || || ||| Sbjct 2168 AAAGATGCCGGAACCATTGCTGGTCTCAATGTGCTCCGAATTATTAATGAGCCAACCGCA 2109 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAG 451466 ||||| | || || || || ||| || ||||| Sbjct 2108 GCTGCGATTGCTTACGG-CTTGGACAA--AAAAG 2078 >seq283853 Length=2038 Score = 98.7 bits (108), Expect = 4e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| |||||||||| || || || |||||||| || || | || |||||||| || | Sbjct 1669 TTACCAATGCAGTAATCACAGTCCCAGCTTATTTTAACGACTCTCAGCGGCAAGCCACCA 1728 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || |||||||| | ||||||||||| || || || ||||| || |||| Sbjct 1729 AAGATGCTGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAACGAACCCACCGCAG 1788 Query 451434 CTGCTCTAGCATATGGACT 451452 | || | || ||||| || Sbjct 1789 CAGCCATTGCGTATGGTCT 1807 >SEQ14828 Length=26171 Score = 87.8 bits (96), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| ||||| |||||||| || |||||| | || |||||||||| || Sbjct 11932 GCCACTAAAGATGCTGGACAGATTGCTGGGTTGAATGTTTTGAGAGTTATTAATGAGCCA 11873 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||| || || ||||| |||||| ||| Sbjct 11872 ACAGCTGCAGCCCTAGCTTATGGATTAG 11845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963735309805040