Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 410 9e-109 seq283853 107 1e-17 seq368607 95.1 9e-14 SEQ47241 95.1 9e-14 SEQ98426 91.5 1e-12 seq150369 89.7 4e-12 SEQ14828 87.8 1e-11 >SEQ85260 Length=18223 Score = 410 bits (454), Expect = 9e-109 Identities = 980/1463 (67%), Gaps = 28/1463 (2%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 |||||| || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 12933 ATTAGTTATTGTAATCTTATTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAG 12874 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||| ||||| | |||||||| || |||||||| || || || | | ||||| Sbjct 12873 GATACCATTTGCATCAATGTCAAATGTCACCTCAATTTGGGGCACACCACGAGGTGCAGG 12814 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| || || || | ||| | ||||| |||||| || ||||| | || || Sbjct 12813 TGGAATACCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTAGTCATGGCTCTCTC 12754 Query 517393 ACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 |||||| | | ||| | || | ||||| | || || |||||||| || || || | Sbjct 12753 ACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAATAGGTGGTGAAGG-T 12697 Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 12696 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGTTTGATTAAGGCAGTCATCACACCACC 12637 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 || || || | ||| |||||||| || | ||||||| || | || | ||| | || Sbjct 12636 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATT 12577 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 ||| | | ||| | |||||||| || || | ||||||||||||||| |||||||| Sbjct 12576 TTCGGATTTGTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTC 12517 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTC 517688 ||||||||| | ||| ||||| | ||| ||||| || || | ||| | || || | Sbjct 12516 ATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTT-TT 12458 Query 517689 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 517748 | ||| || ||||||| ||| || ||||| | |||||||||| | ||| ||| | Sbjct 12457 GGATCTTGGGGATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATTTGTCCTTTGT 12398 Query 517749 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTG 517808 | || || | ||| | | | || || || ||||||||| | | || | || | Sbjct 12397 CTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAG 12338 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAA 517866 | || || || || ||| | |||| | ||| | || ||||||| || || || Sbjct 12337 CATTGAGCTCCTCAAAGCGAGCACGAGTA--ATTGATGTGTAGAAATCAATGCCATCAAA 12280 Query 517867 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926 || || |||| ||||| | || || || || ||| || | |||||| || | ||| Sbjct 12279 TAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTC 12220 Query 517927 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATAT 517984 ||| ||||| | || | ||| | || | ||| ||| | | || |||| Sbjct 12219 ACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATGC 12162 Query 517985 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 518042 || | |||||| || || |||| ||| | || | ||||| ||||| || || || | Sbjct 12161 TTGCGCTTGAATTCCTC--CACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCAC 12104 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102 |||| | |||| ||| | |||| | | |||| || | |||||||||| || ||||| Sbjct 12103 CCAAATGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATAGTCAAAA 12044 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTT 518156 | |||||| || |||||||||| ||||| || || |||||| | | || Sbjct 12043 TGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTC 11984 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 || |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 11983 TGCTCCCTTTTTTATCCAAACCATAGGCAATTGCAGCAGCCGTGGGCTCATTAATGATGC 11924 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| ||||| ||||| | ||| | || |||||||| |||||||| | ||| || || | Sbjct 11923 GCAATACATTGAGACCTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCAT 11864 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAATATAAGCGCTT 518335 | || |||||||| |||||||| || ||| || | |||| ||| | ||||| Sbjct 11863 TGAAGTATGCAGGCACAGTAATTACAGCACTCTG-GACTTTGCAACCCAGGTAAGCCTCG 11805 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || ||| |||||||| | || | ||| || ||||||| ||| || | | |||| Sbjct 11804 GCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGGTCTTG 11745 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 ||| | ||| |||| | | ||||| | | || | | || || Sbjct 11744 ATCTCACACTTATACTCGACTTGTACCTTGGGTTTCCCAGCTTCACTCACCACACGGAAA 11685 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||||| |||||||| || || || | ||||| ||| | | ||||| | || Sbjct 11684 GGCCAGTGCTTCATATCGGACTGCACCGTAGAGTCATCAAATTTGCGGCCAATGAGACGC 11625 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || |||||||| || || ||| | ||||| || || |||||| |||||||||||||| Sbjct 11624 TTGGCATCAAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGGCTGCATCTCCG 11565 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || || |||| || || ||||| | |||||| || || ||||| || ||||| || Sbjct 11564 ATGAGGCGTTCAGTGTCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCG 11505 Query 518636 TTCGCAATAATTTCAACTTTACC 518658 || || ||||| || ||||| || Sbjct 11504 TTGGCGATAATCTCCACTTTCCC 11482 >seq283853 Length=2038 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| ||||||||||||| || || || || ||||| || || || | | |||| Sbjct 1816 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 1757 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | || |||||||| |||||||| | || || ||||||||||| Sbjct 1756 TTCAGGCCAGCAATGGTGCCAGCATCTTTGGTGGCTTGCCGCTGAGAGTCGTTAAAATAA 1697 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || || || |||| Sbjct 1696 GCTGGGACTGTGATTACTGCAT 1675 >seq368607 Length=2412 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| ||||| || ||||| ||||||||||||| | ||| Sbjct 2080 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACA 2139 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 2140 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAA 2199 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | ||||||| Sbjct 2200 GCTGGGACTGTGACCACGGCAT 2221 >SEQ47241 Length=15605 Score = 95.1 bits (104), Expect = 9e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| || ||| | || ||| | |||||| | | Sbjct 6177 TGTACATTAATTTTAACTGAGGGAGATTCGGCCAAATCTTTAGCTGTCTCTGGTTTAGGT 6236 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||||||||||||||| ||||| ||||| ||||| || |||||| || | || ||| | Sbjct 6237 GTTATTGGAAGAGATAGATATGGGGTTTTTCCACTCAGGGGAAAAATTCTTAACGTTCGT 6296 Query 635561 GATGC 635565 || || Sbjct 6297 GAGGC 6301 >SEQ98426 Length=8771 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||| ||| Sbjct 6268 AACTGCACGCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 6327 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | || || || | | |||||| || ||||| ||||||||||| |||| || Sbjct 6328 GGAGTTGTGGGTAGGGACAAATTTGGAGTATTTCCACTGCGAGGAAAACTTCTGAACGTA 6387 Query 635558 AGGGATGC 635565 |||| || Sbjct 6388 CGGGAAGC 6395 >seq150369 Length=2223 Score = 89.7 bits (98), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 1047664 AAATTTACAGGAAAATTATTTTATGATATTGTTATGGGTATTGAATTTAATCCTGAAATA 1047723 ||||| || || || || || ||| | | | ||||| |||||||||||||| | Sbjct 1262 AAATTCACTGGCAATTTCTTCTATAACTTCATGATGGGAATTGAATTTAATCC---ACGC 1318 Query 1047724 TTTGGAAC------TGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTGG 1047777 || |||| |||||| ||| ||||||||||||| |||| |||||| | | ||| Sbjct 1319 TTGGGAAAGTGGTTTGATTTCAAATTGTTTTTTAATGGCCGACCTGGAATTGTAGGATGG 1378 Query 1047778 AATTTGATTAATTTGTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAAT 1047837 | |||||||||||| || | ||| |||||| | ||| | |||| | || ||||| Sbjct 1379 ACTTTGATTAATTTATCCTATGCTGCAAAACAACAGGAATTGTATGGACAAGTCACTAAT 1438 Query 1047838 TCAATGATTCTT 1047849 || ||| | ||| Sbjct 1439 TCTATGCTACTT 1450 >SEQ14828 Length=26171 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 11827 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 11886 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 11887 CTCTCAAAACATTCAACCCAGCAATCTGTCCAGCATCTTTAGTGGC 11932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3757331725086280