Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 419 3e-112 seq368607 212 8e-50 seq202937 140 4e-28 seq8435 136 5e-27 seq283853 102 1e-16 >SEQ85260 Length=18223 Score = 419 bits (464), Expect = 3e-112 Identities = 1044/1573 (66%), Gaps = 28/1573 (2%) Strand=Plus/Minus Query 6590 TCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTA 6649 || || ||||| ||||| |||||||| ||||| | | ||| || ||||| || Sbjct 12986 TCTGCTTCTTGCACCATGCGGTCAATGTCATCTTTGCTGAGGCGCCCTTTGTCATTAGTT 12927 Query 6650 ATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCA 6709 || |||||||| | ||| || | | ||| || | ||| | ||||| | |||||| Sbjct 12926 ATTGTAATCTTATTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAGGATACCA 12867 Query 6710 TTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATA 6769 |||||||||| || || | || | |||||| || ||| | ||||| | ||||||| Sbjct 12866 TTTGCATCAATGTCAAATGTCACCTCAATTTGGGGCACACCACGAGGTGCAGGTGGAATA 12807 Query 6770 CCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCA 6829 ||||| | ||||| | || || | | | || ||| | | | | | ||||| ||| Sbjct 12806 CCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTAGTCATGGCTCTCTCACCCTCA 12747 Query 6830 TAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTC 6889 || |||| | ||| | || || ||| || | |||| | || || | Sbjct 12746 TACACTTGTACCAGCACACTACTCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTTTGC 12687 Query 6890 TTAGATGGAATCGTCGTATTTC-TCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 || | ||||| || || || | | || ||| | ||||| | |||||| ||| || Sbjct 12686 TTGGTGGGAATAGTTGTGTTACGTTTGATTAAG-GCAGTCATCACACCACCAGCAGTCTC 12628 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | || ||||| || |||| || || | || | |||||||| ||| |||| Sbjct 12627 AATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATTTTCGGATTT 12568 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 |||||| ||| || || || || || | || || ||||| || || ||||| || || Sbjct 12567 GTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTCATCAGGATT 12508 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || |||| || || ||||| || ||||| | || | || | ||| || || || Sbjct 12507 TATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTTTTGGATCTTGGG 12448 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || ||||| |||| ||| |||||||| | || ||| || | ||| | Sbjct 12447 GATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATTTGTCCTTTGTCTAGCTTAGC 12388 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || ||||| | || || |||||||| | | |||||| | || | || || Sbjct 12387 ATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAGCATTGAGCTC 12328 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 |||||| || ||||| ||||| ||||| |||||||||| ||| || |||| || ||||| Sbjct 12327 CTCAAAGCGAGCACGAGTAATTGATGTGTAGAAATCAATGCCATCAAATAATGAGTCAAT 12268 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||||| | | || | | ||| | || || || || | ||||| || || || Sbjct 12267 CTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTCACAGGCTGTGCG 12208 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | || |||| || ||| ||| || | ||| || |||||| || || || || || Sbjct 12207 GAGCCGTCGAACTGCTCGCTTGTTGCCAGCAATGTCACGCTTATGCTTGCGCTTGAATTC 12148 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 || || || | | | | || || || || |||||||| || ||||| || Sbjct 12147 CTCCACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCACCCAAATGGGTATCTCC 12088 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || || | ||| ||||||||||| || ||||||| | || | ||||||||||| || Sbjct 12087 AGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATAGTCAAAATGGAAACATCAAATGT 12028 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC------TTATC 7602 |||||||||| |||||| || || || ||| | || | || || || ||||| Sbjct 12027 GCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCTGCTCCCTTTTTTATC 11968 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGC 7661 | ||| || || || || || ||||| || |||||||| || || || ||| || || | Sbjct 11967 CAAACCATAGGCAATTGCAGCAGCCGTGGGCTCATTAATGATGCGCAATACA-TTGAGAC 11909 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 | | ||| || | |||||||| || ||||| ||||| || || || ||||| || || | Sbjct 11908 CTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTATGCAGGCA 11849 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781 | || | || || | |||||| ||| || || | || || || || ||||||| Sbjct 11848 CAGTAATTACAGCACTCTGGACTTTGCAACCCAGGTAAGCCTCGGCTATTTCCTTCATTT 11789 Query 7782 TGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGT-TTCGTTTCACCGTTAAA 7839 |||| | ||||| || ||||| ||||||| | || | || || | |||| ||| | Sbjct 11788 TGGTCAATACCATAGAGGAAATTTCTTCAG--GAAAGAAGGTCTTGATCTCACACTTATA 11731 Query 7840 ATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA---TACGACCAATC 7896 || |||| | | ||||||| | || ||| | ||| | | | ||| | Sbjct 11730 CTCGACTTGTACCTTGGGTTTCCCAGCTTCAC------TCACCACACGGAAAGGCCAGTG 11677 Query 7897 TTTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCAT 7955 ||||||||| || ||| || | ||| ||| || | || || |||||||| |||| Sbjct 11676 CTTCATATCGGACTGCACC-GTAGAGTCATCAAATTTGCGGCCAATGAGACGCTTGGCAT 11618 Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| | ||||| ||||| ||||| || ||| ||||| || || || ||||| || | Sbjct 11617 CAAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGGCTGCATCTCCGATGAGGC 11558 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 |||| | | |||||||| || || || || || || || || ||||||||||| | Sbjct 11557 GTTC---AGTGTCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCGTTGG 11501 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | ||||| || || ||| || | || |||||||| || || || || || || | Sbjct 11500 CGATAATCTCCACTTTCCCGTGCTGGAAAACTCCGACGCAGGAGTATGTGGTGCCCAAGT 11441 Query 8136 CAATACCGATTGC 8148 |||| || || || Sbjct 11440 CAATGCCTATGGC 11428 >seq368607 Length=2412 Score = 212 bits (234), Expect = 8e-50 Identities = 371/540 (69%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||||||||| || | || || |||||||| ||||| || Sbjct 1398 GCACCGTAGGCTACGGCTTCATCGGGGTTGATACTCTTGTTGAGTTCTTTGCCGTTGAAG 1457 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | || || || || |||||||| || || ||||| |||| ||||| Sbjct 1458 AAATCCTGAAGGAGTTTCTGGATCTTGGGGATTCGGGTGGACCCACCAACCAGCACGATA 1517 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | |||||||| | ||| | ||||| || | ||| || ||||| |||| Sbjct 1518 TCGTGCACCTGAGATTTATCCAGCTTGGCATCTCGCAGCGCTTTCTCCACAGGGTCCAGC 1577 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||||||| ||| || || || || || ||||| ||||| || ||| Sbjct 1578 GTGCCGCGGAACAAGTCGGCGTTCAGCTCTTCGAAGCGAGCTCGGGTGATGGAAGTGTAG 1637 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| ||||| | || ||||||||||| | | || | | || || | Sbjct 1638 AAATCAATGCCCTCGTACAGGGAGTCAATTTCAATACTGGCCTGAGTGCTGGAGGACAGG 1697 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || || || || ||||| || || || || | || || | ||||||| ||| || Sbjct 1698 GTGCGTTTCGCCCGCTCGCAGGCGGTGCGCAGGCGCCGGACGGCACGCTTGTTTTCGCTG 1757 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| ||| || | | | ||| Sbjct 1758 ATGTCCTTCTTGTGCTTCCGCTTGAACTCGGTGATGAAATGGTTGACCATCCGGTTGTCG 1817 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| || |||||||| || || |||||||||| ||| ||||||||||| || || Sbjct 1818 AAGTCTTCGCCCCCCAAGTGGGTGTCTCCCGCGGTCGATTTCACTTCAAAGATGCCGTCT 1877 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || ||||| || || || || ||||| ||||| || || || ||| Sbjct 1878 TCGATGGTGAGGATGGAGACATCGAAAGTTCCCCCTCCCAGATCAAAGATCAGCACATTC 1937 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGC 7665 ||||| || || || || || ||||| ||||||||||| || || ||| || || ||||| Sbjct 2092 CCGTAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACA-TTGAGACCAGC 2150 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| ||| | |||||||| || || || || || || || || || || || ||||| || Sbjct 2151 AATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAAGCTGGGACTGT 2210 Query 7726 TACGACCGC 7734 || || || Sbjct 2211 GACCACGGC 2219 >seq202937 Length=1279 Score = 140 bits (154), Expect = 4e-28 Identities = 235/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| |||||||| || || ||||| ||||| || ||||| |||| ||| || || | || Sbjct 840 CAGCTCCTCAAAGCGAGCCCGGGTGATGGAGGTGTAGAAGTCAATGCCCTCATAGAGGGA 899 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||||||||||| | || | | || | || ||||| || ||||| || || Sbjct 900 GTCAATTTCAATGGAAGCCTGGGTGGAGGAGCTGAGGGTACGCTTGGCCCGCTCGCAAGC 959 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 ||| || | || || | ||| ||| || | | || || |||||||| || || || Sbjct 960 CGTGCGCAGCCGCCGGACGGCCCGCTTATTGTCCGTGATGTCCTTCTTATGCTTGCGCTT 1019 Query 7423 AAACTCTTCAGA---GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || ||| || |||||| | | | || ||||| || ||||||| ||| Sbjct 1020 GAA---TTCCGACACGAAGTGGTTCACCATGCGATTGTCAAAATCCTCGCCACCCAGGTG 1076 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || || || || |||| ||| ||||||||||| || | ||||| | | | || || Sbjct 1077 AGTGTCTCCAGCTGTCGATTTCACTTCAAAGATGCCATCCTCAATCGTCAGAATGGACAC 1136 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| || ||||||||||||||||||||||| || || Sbjct 1137 ATCAAAGGTGCCACCACCCAGGTCAAAAATGAGGACATT 1175 >seq8435 Length=68326 Score = 136 bits (150), Expect = 5e-27 Identities = 464/713 (65%), Gaps = 19/713 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || |||||||| || ||||| ||||| || |||||||||||||| || Sbjct 1265 TCAAAGTCCTCCCCGCCCAAGTGGGTGTCCCCTGCGGTGGCCTTGACTTCAAAGATGCCG 1206 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | ||||||||||| || || |||||||||||||||||||| | | Sbjct 1205 TCCTCCATGGAAAGGATAGAAACATCAAAGGTGCCCCCACCCAGGTCAAAAATGAGGATG 1146 Query 7577 -TTCG--TATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 |||| | | | |||| ||| | ||| || || || || || || || || || Sbjct 1145 TTTCGGCTGCCAGCCTCTTGATTCCTGGCATCCAGGCCATAGGCAATGGCAGCTGCTGTG 1086 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || | | || | ||||| ||||| | | ||||| | || || Sbjct 1085 GGCTCGTTTAGGAGCTTTAGGATCTGGAGGCCCGCAATGACTCCAGCATCAATGGTGGCC 1026 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || || | |||| | |||||||| || ||||| |||| || | | || Sbjct 1025 TGCCGCTGAGCATCGCTGAAGTAGGCGGGCACCGTGACGATGGCTTGGGAGATGGAGGAG 966 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || || | | ||||| |||| || ||||| | || ||||| ||| Sbjct 965 CCCAGGTAGGCCTCAGCTGTTTGCTTCATCTTGGCCAGGACCATGGCAGAGATCTCCTCA 906 Query 7811 GCCGCAAACTGTTTCGT--TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG 7868 | | || | | ||| || ||| || |||| | | | | || ||| Sbjct 905 G--GGTAAAAGGTCCGTTGTTTACCTTTGTGGGAGACTTGGACCTTTAGCTTCTCC---T 851 Query 7869 CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 ||| | | || || | | ||| | |||||| || || || || ||| | Sbjct 850 CACAGCTCACCACAGTAAATGGCCAGTGTTTCATGTCCTCCTGTACAGCGGCATCCTCAT 791 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | || || || ||||| ||||| || || ||||| | |||||| | | | | Sbjct 790 ACTTGCGGCCAATCAGCCGCTTGGCATCGAACACCGTGTTCTGGGGGTTGAGAGAGGCCT 731 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 || |||| || | ||| || || || |||| | || || || || ||||| | || Sbjct 730 GGCTCTTGGCTGGGTCTCCAATCAGGTGTTCTGTGTT---GGTGAAGGCCACGTA-GCTG 675 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || ||||||||||| || ||||| || ||||| ||||| ||| ||||| Sbjct 674 GGTGTGGTCCGCTTCCCTTGGTCATTGGCAATGATCTCTACTTTGTCGTGTTGGCAGACA 615 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 | ||||| || | || ||||| | ||||| || || || | |||||||| Sbjct 614 GCCACGCAGGAGAAGGTGGTTCCAAGGTCAATCCCAATAGCCAG-GTCATTTT 563 >seq283853 Length=2038 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| ||||| || || || || || ||||| || || || |||||| Sbjct 1816 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 1757 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||||||||| || | |||||||| || ||||| || || || |||||||| || Sbjct 1756 TTCAGGCCAGCAATGGTGCCAGCATCTTTGGTGGCTTGCCGCTGAGAGTCGTTAAAATAA 1697 Query 7715 GCCGGGACCGT 7725 || ||||| || Sbjct 1696 GCTGGGACTGT 1686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631374560439200