Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq387423 123 3e-23 seq206962 86.0 7e-12 SEQ67274 86.0 7e-12 >seq387423 Length=3253 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | ||||||||||| |||| ||| | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 19103 CAACTA 19108 | |||| Sbjct 2781 CTACTA 2786 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| ||||| ||||||||| || ||||| ||| || || || ||| || ||||| Sbjct 1139 TTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAG--GACTTGACATCACACCCATC 1196 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||| | || | ||||||||||| |||||||| || || | || ||| Sbjct 1197 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTC 1256 Query 18730 TCCATAAAATCAAATGGATT 18749 |||||||| |||||||| || Sbjct 1257 TCCATAAAGTCAAATGGGTT 1276 >seq206962 Length=5195 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 3823 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 3764 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 3763 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 3719 >SEQ67274 Length=15135 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | || | ||||| || ||||||||||| || ||||||| ||||||||| | Sbjct 12631 ATCTTTGATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGA 12572 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 |||||||| || || ||||| | ||||||| ||||| ||||| Sbjct 12571 TATCTGAAAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTC 12527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558782661703200