Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 226 2e-53 seq283853 129 5e-24 seq291000 96.9 3e-14 >SEQ85260 Length=18223 Score = 226 bits (250), Expect = 2e-53 Identities = 382/548 (70%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || ||||| || || || || |||||||| || || || |||| || | || ||| Sbjct 11428 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 11487 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| ||||| || ||||| ||| | ||||| || |||||| | || ||| Sbjct 11488 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 11547 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| | | || |||||||| || |||||| || ||||| | ||| Sbjct 11548 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAAC 11607 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | ||||| | | ||| |||| || || || ||| | Sbjct 11608 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGTCC 11667 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| |||||||||| | || | || |||| ||||| | | ||| | Sbjct 11668 GATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAACCCAAGGTACAAGTC 11727 Query 550291 TACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||| | | | || | || | || ||| ||||||| |||||||| || | Sbjct 11728 GAGT-AT-AAGTGTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 11785 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 |||||||| ||| |||| |||| | ||| |||| | ||| ||||| | Sbjct 11786 CCAAAATGAAGGAAATAGCCGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTAATTA 11845 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || ||| Sbjct 11846 CTGTGCCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATTA 11905 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || ||||| | || || || ||||| || || ||||||||| |||| ||||| Sbjct 11906 CAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCAATTGCCTATGGTT 11965 Query 550530 TTGATAAA 550537 | |||||| Sbjct 11966 TGGATAAA 11973 Score = 150 bits (166), Expect = 1e-30 Identities = 550/847 (65%), Gaps = 28/847 (3%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 |||||||| ||||| || | ||||| ||||||| | ||| | ||||| || || Sbjct 12055 GAAGATGGCATCTTTGAAGTGAAATCTACTGCTGGAGATACCCATTTGGGTGGGGAGGAC 12114 Query 551817 TTTGATAATAGACTGGTAT--CATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTG 551874 ||||| ||| | |||| ||| |||| || || || || || || | || || Sbjct 12115 TTTGACAATCGCATGGTGAGCCATTTTGTG--GAGGAATTCAAGCGCAAGCATAAGCGTG 12172 Query 551875 ATCTATCTA-CATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAA 551933 | | || || | | | || |||| || || | || || || |||||||||||| Sbjct 12173 ACATTGCTGGCAACAAGCGA-GCAGTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAA 12231 Query 551934 CGAGCTCT---TTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGA 551990 || | || ||| || || || | ||||||| | || ||||||||||| || Sbjct 12232 CGTACCCTGAGTTCCTCC---ACCCAGGCTTCTATTGAGATTGACTCATTATTTGATGGC 12288 Query 551991 ATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTT 552050 ||||||| | || | ||| | | || ||||| || | | |||||||||| Sbjct 12289 ATTGATTTCTACACATCAATTACTCGTGCTCGCTTTGAGGAGCTCAATGCTGATCTCTTC 12348 Query 552051 AGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAA-TCCAA 552109 | || ||||||| || || | | | | | ||| | ||| | || ||| ||| Sbjct 12349 CGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAA 12408 Query 552110 AGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT 552169 | || |||||||||| || |||||||| || || | || || || || | ||| ||| Sbjct 12409 ATTA-ATGAAATTGTTCTGGTTGGTGGCTCAACTCGTATCCCCAAGAT---CCAAAAGTT 12464 Query 552170 -----AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCT 552224 ||| ||| ||| ||||| ||| | |||| |||| | ||||| ||||| ||| Sbjct 12465 GCTCCAAG-ACTTCTTT-AATGGAAAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCT 12522 Query 552225 GTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGACAAACTGATGAAAAAC 552282 || || |||||||| || | || || |||||||| | |||||| ||||| Sbjct 12523 GTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCTAATGGGTGACAAA--TCCGAAAATG 12580 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 | ||| | || | || | ||||| | || || ||||| ||| | || || | ||| | Sbjct 12581 TGCAAGACCTTCTGCTGCTTGATGTAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTG 12640 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 || | |||||| | ||| | | || || |||||||| || || | | | Sbjct 12641 GTGTGATGACTGCCTTAATCAAACGTAACACAACTATTCCCACCAAGCAAACCCAGACCT 12700 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || |||||||| || || | | ||| | ||| | | ||| || || ||| Sbjct 12701 TCACCACCTATTCAGACAACCAGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAG 12760 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | ||||| || ||||||| || || | ||| | | |||||||| ||||| | Sbjct 12761 CCATGACTAAGGACAATAATCTGCTGGGCAAGTTTGACCTGACGGGTATTCCACCTGCAC 12820 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 ||||||| || || |||||||| || || || || || ||||| ||||| || | |||| Sbjct 12821 CTCGTGGTGTGCCCCAAATTGAGGTGACATTTGACATTGATGCAAATGGTATCCTCAATG 12880 Query 552583 TGACTGC 552589 | ||||| Sbjct 12881 TTACTGC 12887 >seq283853 Length=2038 Score = 129 bits (142), Expect = 5e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| |||||||||| || || ||||| |||||||| ||||| || || ||||| || | Sbjct 1669 TTACCAATGCAGTAATCACAGTCCCAGCTTATTTTAACGACTCTCAGCGGCAAGCCACCA 1728 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 |||||||||| |||||||| || ||||||||||| || ||||| ||||| || || | Sbjct 1729 AAGATGCTGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAACGAACCCACCGCAG 1788 Query 550512 CTGCACTTGCATATGGACTTGATAAA 550537 | || |||| ||||| || |||||| Sbjct 1789 CAGCCATTGCGTATGGTCTGGATAAA 1814 >seq291000 Length=249 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| |||||||| ||||| ||| | ||| || ||||| || | || Sbjct 222 CCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGG 165 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| |||||||| || || || ||||||||||||||||| Sbjct 164 GTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATG 105 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| ||||| || || || || || |||||| || ||| || | | || || Sbjct 104 CCTTCCTTATCCTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTG-GGCTCCACCTC 46 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| | || || || || || ||||| Sbjct 45 CAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4004261530656200