Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq180737 138 2e-27 seq212999 131 3e-25 seq391991 120 6e-22 seq5017 118 2e-21 seq245910 114 2e-20 SEQ59151 105 1e-17 seq456943 98.7 2e-15 >seq180737 Length=11643 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || || | ||| || || || || |||||||| | Sbjct 7698 GCTGGCAGCCGTTGTTCACGTGATTCATTACTTTCTGCTTCAGCTGCGCTACCTGGTCTC 7757 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || |||||||| ||||| || ||| | |||||| || | Sbjct 7758 GGAGCGCGCTGGCAGTGTTAGACAGTCCCGCGTTCTCGTTCTTTAAGCTCTTCACCTTGT 7817 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | | |||||||||||| |||| ||||| Sbjct 7818 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCTGCATTTGGTGGCGGCCAGGCGGT 7877 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | ||| | ||| |||||||||| ||||| || ||||||| || |||||| Sbjct 7878 TGCGCAGCCGCTTCCTCTCCACCTTGATGCGCTCCTGATCTTCCATGTTAATGGGAGAC 7936 >seq212999 Length=2373 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||| |||| ||||||||||||||||| | |||||| || |||||| ||||||||||| Sbjct 1850 CCTCTGCTGACGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGGCCAGCTCG 1791 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| ||| || |||||| ||||| || || |||| | ||||||| || | Sbjct 1790 CAGCTGGCCTCCAGCGCCCAGTAGTAAATGGTCTCGAAGATCTGCTGGTTGAGCCGCTGG 1731 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 |||| ||| | |||||| | |||| | ||| | || ||||| ||||| ||| Sbjct 1730 GCCTGGGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACC 1671 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | || | | |||| || Sbjct 1670 CCGATGCCGATGGGGCGATGGCGCCGGTTGGA 1639 >seq391991 Length=799 Score = 120 bits (132), Expect = 6e-22 Identities = 118/151 (78%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| |||||||||| ||| |||||| ||| ||||||| || |||| ||| || Sbjct 300 CTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCTTC 241 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || | ||| || ||| || || || |||||||||||| |||||| ||||||| Sbjct 240 CTTCCCGGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCCAAGTGCCAGGGCTCCAG 181 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTGCCG 213968 ||||||||||||||| || || ||| ||||| Sbjct 180 GTAGATGGCAAAGGCCCCGGGTCTC-TGCCG 151 >seq5017 Length=14041 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| ||||| || | | || || || |||| Sbjct 7675 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGGAGGAGGTTGGCCGTCGAGGCCAGT 7616 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | || | | |||||| ||| ||||| || ||||| || | |||||| ||||| Sbjct 7615 TCGGTATTCTGGGTCTTGAGGCTCTTGACTTTTTCTTCCAGGCGGGAGATGCGCTCCAGC 7556 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||| || || |||| ||| || | |||||| || || | ||| || || |||||| Sbjct 7555 TTCCGCCGCCGACACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCGGCCTTG 7496 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 7495 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 7463 >seq245910 Length=872 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||| Sbjct 841 GTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 782 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| |||| || |||||||||||||||||||| | ||| ||||| Sbjct 781 GCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 731 >SEQ59151 Length=9385 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| || |||| | |||||| || || | | ||||| | Sbjct 6565 AGCTGGGTGACCTGGGAGCGGAGAAGGCTGGCGGTAGCGGCCAATTCGGCGTTTTGGCCT 6624 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | || ||||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 6625 TTGAGCGCTTTGACTTTCTCCTCCAAGCGGGCGATGCGCTCCAGCTTGCGCCGGCGGCAC 6684 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| || || | ||||| || ||||| || || ||||| || | ||| || ||| | Sbjct 6685 TTGGAAGCGGCGATACGGTTGCGCAGTCTTTTGCGCTCCGCTTTCAGGCGCTCTTGGCTC 6744 Query 241610 TCC 241612 ||| Sbjct 6745 TCC 6747 >seq456943 Length=203 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 212690 ATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTAT 212749 ||| | |||||| ||||| |||||||| ||||| | ||| |||||||||||| | | Sbjct 141 ATGGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAG 82 Query 212750 GATA-TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGA 212808 || ||| ||||||||| ||||||||| |||||| ||| | || |||||||| |||| Sbjct 81 GACGGTCT-TCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTC-GGGA 24 Query 212809 AGC-CGGGGATGTTCTG 212824 | | | ||||||||||| Sbjct 23 ATCTCCGGGATGTTCTG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926020687539200