Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq391991 120 6e-22 seq245910 100 5e-16 SEQ67274 84.2 4e-11 >seq391991 Length=799 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| || ||||||||||||||||||||| ||||| | ||||| || | || || |||| Sbjct 305 ACCCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGC 246 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || ||| ||| |||| ||| |||| || | |||||||| ||||| |||||| ||| Sbjct 245 TCTTCCTTCCCGGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCCAAGTGCCAGGGC 186 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||| ||| | || ||||||| || Sbjct 185 TCCAGGTAGATGGCAAAGGCCCCGGGTCTCT 155 >seq245910 Length=872 Score = 100 bits (110), Expect = 5e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||||| | ||| |||| | |||||| || |||||||||||||||||||||| Sbjct 860 CCACCTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 801 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| || ||| | ||||||||||||||| |||| Sbjct 800 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 741 Query 221850 CGCCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 740 TCCCCGTCTCCGTCTGAG 723 >SEQ67274 Length=15135 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||||||||||| || || ||||| ||| ||| | ||||| ||||| || | Sbjct 14423 TGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCAGCCATATTTT 14482 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||||||| ||| ||| ||||| || || |||||| ||||| || || || ||||| Sbjct 14483 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCT-TACTTTCTCCAATGAACTTATTAGCAGA 14541 Query 26002 GACGA 26006 || || Sbjct 14542 GATGA 14546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923348593107200