Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 206 2e-47 seq368607 105 4e-17 seq150369 105 4e-17 seq264973 102 5e-16 seq117536 87.8 1e-11 >SEQ85260 Length=18223 Score = 206 bits (228), Expect = 2e-47 Identities = 382/553 (69%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || ||||| || || || || ||| || || | |||| || | || || Sbjct 11427 TGCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAA 11486 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || ||||| |||||||| || | || ||||| |||||| | ||||| Sbjct 11487 AGTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTAC 11546 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || || |||||||| || || |||||| || ||||| || Sbjct 11547 GGACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAA 11606 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || || |||||||| || | | ||||| || || |||||||| | || || || || Sbjct 11607 CACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGTC 11666 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| || |||||||| ||| | | || | ||| ||||| | || ||| Sbjct 11667 CGATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAACCCAAGGTACAAGT 11726 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | || | | |||| | || || | || ||| ||||||| || ||||| || Sbjct 11727 CGAGTATAAGT--GTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 11784 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGA-TGCAGTAA 474743 |||||||||| ||| || ||| | || || || |||| | || ||| |||| Sbjct 11785 ACCAAAATGAAGGAAATAGCCGAGG-CTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTAA 11842 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || ||||| || ||||| || ||||| ||||| || |||||||| || | | Sbjct 11843 TTACTGTGCCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCA 11902 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || ||||||| ||||| || || || |||||||| || || || || ||| |||| |||| Sbjct 11903 TTACAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCAATTGCCTATG 11962 Query 474864 GTCTTGATAAGAA 474876 || | ||||| || Sbjct 11963 GTTTGGATAAAAA 11975 Score = 199 bits (220), Expect = 3e-45 Identities = 535/813 (66%), Gaps = 14/813 (2%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTAT--CATGGT 475424 || ||||||||| | ||| | ||||| || || ||||| ||| | | || ||| | Sbjct 12082 ACTGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTT 12141 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTC----AACATCTGCTAAAGCA 475480 ||| || || |||||| | || |||| ||| || | |||| | |||| Sbjct 12142 GTG--GAGGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCG----AGCA 12195 Query 475481 TTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAA 475540 | |||| || | || || |||||| | || || || | || ||| | || || Sbjct 12196 GTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTCCTCCACCCAG 12255 Query 475541 ACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGG 475600 || || |||| |||| || | ||||| || ||||||| | || ||||| | Sbjct 12256 GCTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTACACATCAATTACTCGT 12315 Query 475601 GCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAA 475660 ||| ||||| || | | |||||||||| | || ||||||| || || | Sbjct 12316 GCTCGCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAG 12375 Query 475661 GTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | ||| | ||| |||| || |||||| |||| | ||||||||||||| || || || Sbjct 12376 GCTCTTCGTGATGCTAAGCTAGACAAAGGACAAATTAATGAAATTGTTCTGGTTGGTGGC 12435 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTA 475780 ||||| | || || || || | | |||| | | |||||||| ||| || || Sbjct 12436 TCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTCTTTAATGGAAAAGAGCTA 12495 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 || |||| ||||||||||||||||||| |||||||| |||||||| || || |||||| Sbjct 12496 AACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAGGCTGCTATT 12555 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 || ||| | | ||| || | | | || | || |||| ||| | |||||| Sbjct 12556 CTAATGGGTGACAAATCCGAAAATGTGCAAGACCTTCTGCTGCTTGATGTAGCACCACTT 12615 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACA-GAAATACTCC 475959 || | ||| |||| || | ||| || | |||||| |||| | | | | || || | Sbjct 12616 TCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGC-CTTAATCAAACGTAACACAAC 12674 Query 475960 TATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 ||| || ||| || | | || |||| ||||| || || || | | ||| Sbjct 12675 TATTCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGACAACCAGAGTAGTGTGCT 12734 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 | ||| | | ||| ||||| ||| | ||||| || ||||| || || | || Sbjct 12735 GGTACAAGTGTATGAGGGTGAGAGAGCCATGACTAAGGACAATAATCTGCTGGGCAAGTT 12794 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||||| ||||| || | || || || |||||||| || || ||||| Sbjct 12795 TGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACATTTGA 12854 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||||||||||||||||| || ||||||||||| Sbjct 12855 CATTGATGCAAATGGTATCCTCAATGTTACTGC 12887 >seq368607 Length=2412 Score = 105 bits (116), Expect = 4e-17 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| ||||| ||||| || || ||||| || || ||||||| Sbjct 2221 ATGCCGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCTACAAAAGATG 2162 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| ||||| | || ||||||||||| ||||| ||||| || Sbjct 2161 CCGGAACCATTGCTGGTCTCAATGTGCTCCGAATTATTAATGAGCCAACCGCAGCTGCGA 2102 Query 474855 TTGCTTATGGTCTTG 474869 ||||||| || |||| Sbjct 2101 TTGCTTACGG-CTTG 2088 >seq150369 Length=2223 Score = 105 bits (116), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Minus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 1450 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 1391 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 1390 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 1331 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | | ||| || || | Sbjct 1330 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAAT 1275 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 1274 TGCCAGTGAATTT 1262 >seq264973 Length=2980 Score = 102 bits (112), Expect = 5e-16 Identities = 138/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 305 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 364 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 365 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 424 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | | ||| || || | Sbjct 425 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAAT 480 Query 80532 TACCAGTACATTT 80544 | |||| |||| Sbjct 481 TGTCAGTGAATTT 493 >seq117536 Length=7824 Score = 87.8 bits (96), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 299107 TGCTTCTGAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGA 299166 ||| |||||| ||||||||||||| | | | ||| |||| |||||||||||||| || Sbjct 3231 TGCATCTGAACGCCAGATTAAAAAAGCATTTCATAAACTAGCAATGAAATATCATCCAGA 3290 Query 299167 CAGAAATAAAAGTCCTGAAGCGGAAGAAAAGTT 299199 || ||||||||| |||| ||| |||| ||| || Sbjct 3291 CAAAAATAAAAGCCCTGGAGCAGAAGCAAAATT 3323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3247873634960240