Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq147302 201 1e-46 >seq147302 Length=2612 Score = 201 bits (222), Expect = 1e-46 Identities = 646/994 (65%), Gaps = 15/994 (2%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||| ||| | |||||| |||| ||| || | || || ||||| || || || | Sbjct 1012 TGTCTCGTAAATGTTCTTCCAAACACTGAATTGCAAAAGGATCAACATCAGTATCAAACT 1071 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||| || ||| ||| |||||| || ||||||| || || | Sbjct 1072 TGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGACTCCAAAGA 1128 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | ||| || || |||||||| ||||| |||| || || | || | Sbjct 1129 CACATACAGAACGGACGTGAACTCCATTGCAAGGAGGGTAAGGAGCACCCTTGGATACAT 1188 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||| |||||||||||||||| ||| | || | ||| ||||| || | Sbjct 1189 CGCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAACTGCATTCATATCGGAAACATCAT 1248 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 ||||| || | ||| |||||||| ||||| | || || ||||| | || ||||| Sbjct 1249 ATTTG-CCACTGGCGGAGACGGCACCAGGAACCTCAGGGATTCGCTGAATTGTTGCCCAT 1307 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || || ||||| ||||| |||| |||||| || || | ||| || Sbjct 1308 AAGTATTCATCAGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAATTTTGCTA 1367 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | | | || | || | || ||||| || || || || ||||| Sbjct 1368 TTCTCTAATATATATTCCACAAACCTCCTACTAACAACAAAATAGGCACTTCCAGAGAAA 1427 Query 160464 ATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || ||| || | ||| || ||| | |||||| || ||||| | | || | Sbjct 1428 ATGGGTGTGTTGAGAGGTGG-GTGCTGTTTGTCTATCCCTGTGTTTTTTATCTTGCCATC 1486 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | |||| | ||||||||||| ||| |||| | ||||| |||||| || Sbjct 1487 AATTATTTCGTGATGTTTCTTCCACCTCACCTCTTTGTTTGAAGGCATTTTTTCCGTTTC 1546 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || || || |||||| ||| | ||||| | || || || ||| | || || |||| Sbjct 1547 TAAGCTATTTTCACCGTTGAGGGCTTTCAATTTCTCCACTATTTCTTGATTGGTTTTGAT 1606 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 || || || ||||||| | || || | ||||||||| || | || | || Sbjct 1607 TGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCCTCCTATAGAG 1666 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 ||| ||||||| || | || || || || |||||||| || || |||||||| | || Sbjct 1667 ATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACACTACACTTTC 1726 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCC-A 160818 | || ||||| | ||||| |||| ||||| || | || ||| || | ||| | Sbjct 1727 CAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCCTTTACAGCTGCCAA 1786 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 |||||| || | |||| ||| || || | ||| || ||||||||| || | Sbjct 1787 GAAAGA----CTCTGGGGACTTTTTGTCAACATGAATGCAGTAATAGTTCTGAGGAGCAT 1842 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 | |||| || || | ||||| | ||| | || ||||||| ||| || || || | Sbjct 1843 ATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATATG 1902 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGA 160998 | || ||||| || | || || | || || | | | | || || ||| |||| | Sbjct 1903 CAATGGGAAATTCTGCTTCTTCTTGGCTAAGAGGTTCCATAATATATTTCCGCTTCTTAA 1962 Query 160999 TAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| | ||||| |||||||||||||| Sbjct 1963 TAAAGGAGGTGCAATCAATTGTCATGTTGATATA 1996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573803649688800