Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 558 5e-154 seq291000 185 1e-41 seq252873 176 6e-39 seq202937 147 3e-30 seq256576 93.3 6e-14 seq368607 84.2 3e-11 seq8435 82.4 1e-10 >SEQ85260 Length=18223 Score = 558 bits (618), Expect = 5e-154 Identities = 1051/1536 (68%), Gaps = 31/1536 (2%) Strand=Plus/Plus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||||||| | || |||||||| ||||| || || || || ||||||||||| Sbjct 11488 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 11547 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | |||||| ||| | |||||||| || || ||||| |||||||| || | ||| Sbjct 11548 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAAC 11607 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| ||||| ||||| ||| || | || || | Sbjct 11608 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGTCC 11667 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 ||||| ||| ||||| ||| || || ||| |||| || || | | | | Sbjct 11668 GATATGAAGCACTGGCCTTTCCGTGTGGTGA---GTGAAGCTGGGAAACCCAAGGTACAA 11724 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || | | | |||||| || || ||| ||||||||||| |||||||| ||| Sbjct 11725 GTCGAGTATAAGTGTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 11784 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | || |||||||| | || || ||| | ||||| | || | ||| || | Sbjct 11785 ACCAAAATGAAGGAAATAGCCGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTAATT 11844 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| ||||||| ||| || ||||| || || || || || || | | | ||| Sbjct 11845 ACTGTGCCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATT 11904 Query 195779 GCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | ||||| || ||| || | || || ||||| || || || ||||||||||| ||||| Sbjct 11905 ACAGGTCTCAA-TGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCAATTGCCTATGG 11963 Query 195838 TCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 | |||| || || || | | || || ||||| |||||||||| | ||||| Sbjct 11964 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTGCTGATCTTTGACTTGGGTGG 12023 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 ||| || |||||||| || || | | |||||||| ||| || || ||||| || |||| Sbjct 12024 TGGCACATTTGATGTTTCCATTTTGACTATTGAAGATGGCATCTTTGAAGTGAAATCTAC 12083 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTC 196011 |||||| ||||| ||| | ||||| || || || || || | | | ||||| Sbjct 12084 TGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTTGT 12143 Query 196012 TGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCG 196071 || || ||| || ||| ||||| || ||| |||| || | || |||| || Sbjct 12144 GGAGGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCGAGCAGTTCGACG 12203 Query 196072 GCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGT 196131 ||| | || || |||||| | |||||||| || || ||| | | || | | Sbjct 12204 GCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTCCTCCACCCAGGCTTCTAT 12263 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 ||||||||| || || ||||| || ||||| ||||| ||| | ||||| ||||| || || Sbjct 12264 TGAGATTGACTCATTATTTGATGGCATTGATTTCTACACATCAATTACTCGTGCTCGCTT 12323 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 ||| ||| | || ||||| | || | | | |||||||| || | | ||||| Sbjct 12324 TGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCG 12383 Query 196252 TGACGCAAAGATGGATAA--GTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 ||| || ||| | || || | | || || |||||||||| || || || || ||||| Sbjct 12384 TGATGCTAAGCTAGACAAAGGACAAA--TTAATGAAATTGTTCTGGTTGGTGGCTCAACT 12441 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAA 196368 ||||| || ||||| ||| || |||| | || |||||| ||| ||||| ||||||| Sbjct 12442 CGTATCCCCAAGATCCAAAAGTTGCTC-CAAGACTTCTTTAATGGAAAAGAGCTAAACAA 12500 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 || || || || |||||||| || || |||||||| || || |||||||||||||| Sbjct 12501 AAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCT--- 12557 Query 196429 AGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATC 196485 | | |||||| | || || ||||| |||||||| |||||||| ||||| | || Sbjct 12558 AATGGGTGACAAATCCGAAAATGTGCAAGACCTTCTGCTGCTTGATGTAGCACCACTTTC 12617 Query 196486 CCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTAT 196545 |||||| |||| || || |||||||| |||||| | || | | ||||||||||| Sbjct 12618 TCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACGTAACACAACTAT 12677 Query 196546 TCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAG----GTGTTC 196601 ||| || ||| | || ||| | || ||||| || ||||||| |||| | Sbjct 12678 TCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGA----CAACCAGAGTAGTGTGC 12733 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTT 196661 | ||||| ||||| || || | || | ||||| || |||| || || | | Sbjct 12734 TGGTACAAGTGTATGAGGGTGAGAGAGCCATGACTAAGGACAATAATCTGCTGGGCAAGT 12793 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 | || ||||||| |||||| ||||||| | ||||| || || ||| | || || | Sbjct 12794 TTGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACATTTG 12853 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | || || |||||||| || || || || || || | ||||||| | || ||| Sbjct 12854 ACATTGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCACAGGAAAAGAGA 12913 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | |||||| || || |||||||| ||||| || || || || ||||| || |||| Sbjct 12914 ATAAGATTACAATAACTAATGACAAAGGGCGCCTCAGCAAAGATGACATTGACCGCATGG 12973 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | ||||| || || |||| || ||| || |||| Sbjct 12974 TGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGAGG 13009 >seq291000 Length=249 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | ||||| || || |||||||| ||||| ||| | Sbjct 1 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 60 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| || ||||| || ||||||||||||||||| || |||||| Sbjct 61 GACACCATTGAGAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 120 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || |||||||| |||||||| || |||||| | || |||||| Sbjct 121 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 180 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 181 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 227 >seq252873 Length=5941 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | || || || || |||||||| ||||| ||| | Sbjct 1027 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 1086 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || || |||||||||||||| ||||||||| Sbjct 1087 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 1146 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || |||||||| |||||||| || || ||| | || |||||| Sbjct 1147 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTACAAC 1206 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || || ||||| || Sbjct 1207 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 1238 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | || || || || |||||||| ||||| ||| | Sbjct 1255 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGC 1314 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||| || ||||| Sbjct 1315 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1374 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || |||||||| |||||||| || || ||| | || |||||| Sbjct 1375 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAAC 1434 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || ||||| || || Sbjct 1435 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCT 1466 >seq202937 Length=1279 Score = 147 bits (162), Expect = 3e-30 Identities = 365/547 (67%), Gaps = 14/547 (3%) Strand=Plus/Minus Query 195865 AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGA 195924 |||||| | || ||||| || |||||||| || |||||||| || |||| | ||||| Sbjct 1176 AAATGTCCTCATTTTTGACCTGGGTGGTGGCACCTTTGATGTGTCCATTCTGACGATTGA 1117 Query 195925 AGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTT 195984 | ||| || || ||||| || | || ||||| || ||||| || ||||| || ||||| Sbjct 1116 GGATGGCATCTTTGAAGTGAAATCGACAGCTGGAGACACTCACCTGGGTGGCGAGGATTT 1057 Query 195985 CGATGCACGTCTTCTCCGTCATTT-GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATA 196043 || || | | || || || | || ||| || ||| ||||||| || | Sbjct 1056 TGACAATCGCATGGTGAACCACTTCGTGTCG-GAATTCAAGCGCAAGCATAAGAAGGACA 998 Query 196044 TTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAA 196103 | | | ||| |||| | || ||||| | || || || || || ||||| || | Sbjct 997 TCACGGACAATAAGCGGGCCGTCCGGCGGCTGCGCACGGCTTGCGAGCGGGCCAAGCGTA 938 Query 196104 CTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACT 196163 | ||| || | | || | |||| ||||| || | | ||| || ||||||| Sbjct 937 CCCTCAGCTCCTCCACCCAGGCTTCCATTGAAATTGACTCCCTCTATGAGGGCATTGACT 878 Query 196164 TCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGT 196223 |||| || | || ||||| || || ||||| ||| | || |||| | || || Sbjct 877 TCTACACCTCCATCACCCGGGCTCGCTTTGAGGAGCTGAATGCTGACCTCTTCCGGG--- 821 Query 196224 GTA---TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTG 196280 ||| |||| || || || | | | || || || ||| |||| ||| | |||| Sbjct 820 GTACCCTGGAGCCGGTGGAGAAGGCTTTGCGGGATGCCAAGTTGGACAAGGCCCAGGTCC 761 Query 196281 ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTT-TCT 196339 | || || || || ||||| || |||||||| ||||| ||||| || || |||| | Sbjct 760 ACGACATAGTGCTGGTGGGGGGCTCAACCCGCATTCCCAAGATCCA---GAAGCTTCTGC 704 Query 196340 AG--CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTT 196397 || |||||||||| | ||| | ||||| | ||||| || ||||||||||| |||| Sbjct 703 AGGACTTCTTCAATGGCAGAGAGCTCAACAAGAGCATCAATCCAGATGAAGCAGTGGCTT 644 Query 196398 ATGGTGC 196404 |||| || Sbjct 643 ATGGAGC 637 >seq256576 Length=4007 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||||||||| || || ||||| |||||||| ||||| ||| | Sbjct 1432 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAGT 1373 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 |||||||| || || |||| ||||| ||||| || |||||||| Sbjct 1372 GACACAATTGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGG 1329 >seq368607 Length=2412 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/211 (69%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 196406 GCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTG 196462 || ||||| ||||| ||||| || || | |||| | | ||||| |||||||| || Sbjct 1126 GCTGTTCAAGCTGCAATTCTATCCGGGG---ACAAATCTGAAAACGTGCAAGATCTGTTG 1070 Query 196463 CTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAA 196522 | || ||||| | || | ||||||||| | || ||||| ||||| || ||||| Sbjct 1069 TTGCTGGATGTGACTCCTCTCTCCCTGGGTATCGAGACAGCTGGTGGGGTCATGACAGTC 1010 Query 196523 ATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCC 196582 | || | | ||||| || || || || ||| || || ||| | || |||||| Sbjct 1009 CTGATCAAACGCAACACCACAATCCCTACCAAGCAGACTCAGACCTTCACTACATATTCC 950 Query 196583 GATAATCAACCAGGTGTTCATATTCAAGTAT 196613 ||||| || |||||||| | ||||| |||| Sbjct 949 GATAACCAGCCAGGTGTGCTGATTCAGGTAT 919 >seq8435 Length=68326 Score = 82.4 bits (90), Expect = 1e-10 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || || | ||||| || | ||| || || | ||| || ||| | || Sbjct 574 GCTATTGGGATTGACCTTGGAACCACCTTCTCCTGCGTGGCTGTCTGCCAACACGACAAA 633 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 |||||||| || | ||||||||||| || || || || || ||||| ||||| || Sbjct 634 GTAGAGATCATTGCCAATGACCAAGGGAAGCGGACCACACCCAGCTACGTGGCCTTCACC 693 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 | | |||| || ||||||| | || || | ||| | || | ||||| || Sbjct 694 AACACAGAACACCTGATTGGAGACCCAGCCAAGAGCCAGGCCTCTCTCAACCCCCAGAAC 753 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGAT 195523 || || || || || ||||| || ||||| ||||||| | |||| Sbjct 754 ACGGTGTTCGATGCCAAGCGGCTGATTGGCCGCAAGTATGAGGAT 798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 653969663713600