Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq201261 174 2e-37 seq204247 152 6e-31 seq292276 114 2e-19 seq234392 104 3e-16 seq358814 102 1e-15 seq289370 100 3e-15 seq245910 98.7 1e-14 seq391991 95.1 1e-13 >seq201261 Length=299 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 39 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 98 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 99 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 158 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 159 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 218 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 219 GGACCTGCTTGAGCACCTTGTAGA 242 >seq204247 Length=346 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||||||||||| ||||||||||| |||| | || Sbjct 61 GCTTGGCCAGCTCCCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 120 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| ||| ||||| ||||||| |||| | Sbjct 121 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGA 180 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 181 TGTCGTTCACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 240 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 241 GCACCTGCTTCAGCACCTTGTA 262 >seq292276 Length=2347 Score = 114 bits (126), Expect = 2e-19 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||| |||||||||||||| | | || Sbjct 60 GCTTGGCCAGCTCGCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 119 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||||| | ||||||| |||| | Sbjct 120 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 179 Query 1254463 TGTCGTTG 1254470 |||||||| Sbjct 180 TGTCGTTG 187 >seq234392 Length=3348 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 246 CGTCATCTCCTTCGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 187 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| ||| ||||| || ||||| ||||||| |||||| |||||||| Sbjct 186 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGACACGGCGTCAACCGC 135 >seq358814 Length=525 Score = 102 bits (112), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||||||||| |||||||||||||| | | || Sbjct 39 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGCACGGCTGTCTGGATCTCGCGGGAGGTGA 98 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||||| ||| ||||| | ||||| |||| | Sbjct 99 TAGTGGAGCGCTTGTTGTAGTGCGCCAAGCGGGACGCCTCTCCAGCTATGCGCTCGAAGA 158 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 | ||||||||||| || ||||||| Sbjct 159 TATCGTTGACAAAGGAATTCATGA 182 >seq289370 Length=689 Score = 100 bits (110), Expect = 3e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||| || || || |||||||||||||| ||||| || || |||||||||| Sbjct 420 CGGCCACCCCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTGCTTCAGCGTGTCGT 479 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||||||||| |||| |||||||| | ||||||||| Sbjct 480 AGATGCCCTCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCA 522 >seq245910 Length=872 Score = 98.7 bits (108), Expect = 1e-14 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||||||||| |||||| || | | || |||||||||||||||||| | || Sbjct 834 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 775 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| |||||||||||||| || ||||| |||| | | | | Sbjct 774 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGACTCAATC 715 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 | ||| |||| | ||| | || ||| || | ||| | ||||||| Sbjct 714 ACGGCGTACCACAGCTGCTGGGCCTTCACCACTTTGCGCACCCGGCCCT 666 >seq391991 Length=799 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| |||||||| |||| || ||||| |||||||| || |||| | ||| ||||| Sbjct 297 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCTTCCTT 238 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||| |||||| || |||||||| | || | ||||| |||||| ||||||||||| Sbjct 237 CCCGGTGTTCTTCTTCAGGTCGAGGAACTCAAAGATGTCCAAGTGCCAGGGCTCCAGGTA 178 Query 1628568 GCAGGCAAAGGCGCC 1628582 | ||||||||| || Sbjct 177 GATGGCAAAGGCCCC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6068291420361460