Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq201261 232 1e-54 seq204247 197 2e-44 seq292276 176 7e-38 seq358814 159 5e-33 seq245910 104 4e-16 seq234392 102 1e-15 seq391991 87.8 3e-11 seq289370 87.8 3e-11 >seq201261 Length=299 Score = 232 bits (256), Expect = 1e-54 Identities = 197/243 (81%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 1 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCAG 60 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | | Sbjct 61 GAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGTG 120 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||||||| |||||||| ||||||| |||| ||||||||||| || |||||||| Sbjct 121 GGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCAT 180 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| | ||| ||||||||| ||||||||| |||||||||||||||||||| Sbjct 181 GATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGTA 240 Query 1485711 AAC 1485713 || Sbjct 241 GAC 243 >seq204247 Length=346 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || || ||||||||| ||||||| || || ||| Sbjct 22 TGTATTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCCGGCA 81 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 82 GCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 141 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| ||||||| |||| |||||||| || |||||||||| Sbjct 142 GGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 201 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 202 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 261 Query 1485710 AAAC 1485713 |||| Sbjct 262 AAAC 265 >seq292276 Length=2347 Score = 176 bits (194), Expect = 7e-38 Identities = 139/167 (83%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 21 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGCA 80 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 81 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 140 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1485636 ||||||||||| |||||||| | ||||||| |||| ||||||||| Sbjct 141 GCGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTG 187 >seq358814 Length=525 Score = 159 bits (176), Expect = 5e-33 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| || || |||||||||||| ||||||| || || ||| Sbjct 1 GTACTTGGTGACGGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCCAGCTCTCCCGGCAG 60 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 || ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | | Sbjct 61 GAGGAGGCGCACGGCTGTCTGGATCTCGCGGGAGGTGATAGTGGAGCGCTTGTTGTAGTG 120 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||| |||| ||||| | ||||| |||| || ||||||||||| || ||||| Sbjct 121 CGCCAAGCGGGACGCCTCTCCAGCTATGCGCTCGAAGATATCGTTGACAAAGGAATTCAT 180 Query 1485651 GAT 1485653 ||| Sbjct 181 GAT 183 >seq245910 Length=872 Score = 104 bits (114), Expect = 4e-16 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||||||||| |||||| || | ||||||||||||||||||||||||| || Sbjct 834 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 775 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTG 2071688 ||||| || |||||||| ||||||||||||| |||||||| |||| Sbjct 774 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 725 >seq234392 Length=3348 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 246 CGTCATCTCCTTCGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 187 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 186 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGACACGGCGTCAACCG 136 >seq391991 Length=799 Score = 87.8 bits (96), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| || |||| ||||| || || |||| | ||| ||||| ||| |||||| |||| Sbjct 280 TCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCTTCCTTCCCGGTGTTCTTCTTCA 221 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||||||| | || | || ||| |||||| |||||||||||| ||||||||| || Sbjct 220 GGTCGAGGAACTCAAAGATGTCCAAGTGCCAGGGCTCCAGGTAGATGGCAAAGGCCCC 163 >seq289370 Length=689 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||| || || || | |||||||||||| ||||| | |||||||| |||| Sbjct 420 CGGCCACCCCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTGCTTCAGCGTGTCGT 479 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||||||||| |||| |||||||| | |||||||| Sbjct 480 AGATGCCCTCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7865890810313820