Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value SEQ85260 423 1e-112 seq283853 107 1e-17 seq368607 98.7 7e-15 SEQ98426 96.9 3e-14 SEQ47241 91.5 1e-12 seq150369 89.7 4e-12 SEQ14828 87.8 1e-11 >SEQ85260 Length=18223 Score = 423 bits (468), Expect = 1e-112 Identities = 983/1463 (67%), Gaps = 28/1463 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 |||||| || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 12933 ATTAGTTATTGTAATCTTATTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAG 12874 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||| ||||| | |||||||| || |||||||| || || || | | ||||| Sbjct 12873 GATACCATTTGCATCAATGTCAAATGTCACCTCAATTTGGGGCACACCACGAGGTGCAGG 12814 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| || || || | ||| | ||||| |||||| || ||||| | || || Sbjct 12813 TGGAATACCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTAGTCATGGCTCTCTC 12754 Query 281560 ACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 |||||| | | ||| | || | ||||| | || || |||||||| || || || | Sbjct 12753 ACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAATAGGTGGTGAAGG-T 12697 Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 12696 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGTTTGATTAAGGCAGTCATCACACCACC 12637 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736 ||| || || | ||| |||||||| || | ||||||| || | || | ||| | || Sbjct 12636 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATT 12577 Query 281737 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 ||| | | ||| | |||||||| || || | ||||||||||||||| |||||||| Sbjct 12576 TTCGGATTTGTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTC 12517 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTC 281855 ||||||||| | ||| ||||| | ||| ||||| || || | ||| | || || | Sbjct 12516 ATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTT-TT 12458 Query 281856 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 | ||| || ||||||| ||| || ||||| | |||||||||| | ||| ||| | Sbjct 12457 GGATCTTGGGGATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATTTGTCCTTTGT 12398 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 | || || | ||| | | | || || || ||||||||| | | | || | || | Sbjct 12397 CTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAG 12338 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAA 282033 | || || || || ||| | |||| | ||| | || ||||||| || || || Sbjct 12337 CATTGAGCTCCTCAAAGCGAGCACGAGTA--ATTGATGTGTAGAAATCAATGCCATCAAA 12280 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 || || |||| ||||| | || || || || ||| || | |||||| || | ||| Sbjct 12279 TAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTC 12220 Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATAT 282151 ||| ||||| | || | ||| | || | ||| ||| | | || |||| Sbjct 12219 ACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATGC 12162 Query 282152 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 282209 || | |||||| || || |||| ||| | || | ||||| ||||| || || || | Sbjct 12161 TTGCGCTTGAATTCCTC--CACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCAC 12104 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | |||| ||| | |||| | | |||| || | |||||||||| || ||||| Sbjct 12103 CCAAATGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATAGTCAAAA 12044 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTT 282323 | ||||||| || |||||||||| ||||| || || |||||| | | || Sbjct 12043 TGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTC 11984 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 || |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 11983 TGCTCCCTTTTTTATCCAAACCATAGGCAATTGCAGCAGCCGTGGGCTCATTAATGATGC 11924 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| ||||| ||||| | ||| | || |||||||| |||||||| | ||| || || | Sbjct 11923 GCAATACATTGAGACCTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCAT 11864 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 | || |||||||| |||||||| || ||| |||| |||| || | ||||| Sbjct 11863 TGAAGTATGCAGGCACAGTAATTACAGCACTCTG-GACTTTGCAACCCAGGTAAGCCTCG 11805 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 ||| ||| |||||||| | || | ||| || ||||||| ||| ||| | | |||| Sbjct 11804 GCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGGTCTTG 11745 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 ||| | ||| |||| | | ||||| | | || | | || || Sbjct 11744 ATCTCACACTTATACTCGACTTGTACCTTGGGTTTCCCAGCTTCACTCACCACACGGAAA 11685 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||| | |||||||| || || || | ||||| ||| | | ||||| | || Sbjct 11684 GGCCAGTGCTTCATATCGGACTGCACCGTAGAGTCATCAAATTTGCGGCCAATGAGACGC 11625 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || |||||||| || || ||| | ||||| | || |||||| |||||||||||||| Sbjct 11624 TTGGCATCAAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGGCTGCATCTCCG 11565 Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 || || |||| || || ||||| | |||||| || || ||||| || ||||| || Sbjct 11564 ATGAGGCGTTCAGTGTCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCG 11505 Query 282803 TTCGCAATAATTTCAACTTTACC 282825 || || ||||| || ||||| || Sbjct 11504 TTGGCGATAATCTCCACTTTCCC 11482 >seq283853 Length=2038 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| ||||||||||||| || || || || ||||| || || || | | |||| Sbjct 1816 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 1757 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | || |||||||| |||||||| | || || ||||||||||| Sbjct 1756 TTCAGGCCAGCAATGGTGCCAGCATCTTTGGTGGCTTGCCGCTGAGAGTCGTTAAAATAA 1697 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || || || |||| Sbjct 1696 GCTGGGACTGTGATTACTGCAT 1675 >seq368607 Length=2412 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| ||||| || ||||| ||||||||||||| | ||| Sbjct 2080 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACA 2139 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 2140 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAA 2199 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || | ||||||| ||| || Sbjct 2200 GCTGGGACTGTGACCACGGCATTTGTAAC 2228 >SEQ98426 Length=8771 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||||||| Sbjct 6268 AACTGCACGCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 6327 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | || || || | | |||||| || ||||| ||||||||||| |||| || Sbjct 6328 GGAGTTGTGGGTAGGGACAAATTTGGAGTATTTCCACTGCGAGGAAAACTTCTGAACGTA 6387 Query 400414 AGGGATGC 400421 |||| || Sbjct 6388 CGGGAAGC 6395 >SEQ47241 Length=15605 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||||| || ||||||||||| || ||| | || ||| | ||||| | | Sbjct 6177 TGTACATTAATTTTAACTGAGGGAGATTCGGCCAAATCTTTAGCTGTCTCTGGTTTAGGT 6236 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||||||||||||||| ||||| ||||| ||||| || |||||| || | || ||| | Sbjct 6237 GTTATTGGAAGAGATAGATATGGGGTTTTTCCACTCAGGGGAAAAATTCTTAACGTTCGT 6296 Query 400417 GATGC 400421 || || Sbjct 6297 GAGGC 6301 >seq150369 Length=2223 Score = 89.7 bits (98), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 1079027 AAGAATCATTGAATTAGAAACGTATCCAAAATTTTCGTATTGTTTCATTGCACACGACAA 1079086 ||| | ||| ||||||| || | |||| | ||| | |||||| ||| | || || Sbjct 1450 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 1391 Query 1079087 ATTAATCAAATTCCAAGCAATAATTCCGGGTCTACCATTAAAAAACAGTTTCAAATCA-- 1079144 |||||||||| |||| | | |||||| |||| ||||||||||||| ||| |||||| Sbjct 1390 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 1331 Query 1079145 ----GTTCCAAATATTTCAGGATTAAATTCAATACCCATAACAATATCATAAAATAATTT 1079200 |||| || | |||||||||||||| ||||| | | | ||| || || || Sbjct 1330 CCACTTTCCCAAGCGT---GGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAATT 1274 Query 1079201 TCCTGTAAATTT 1079212 || || ||||| Sbjct 1273 GCCAGTGAATTT 1262 >SEQ14828 Length=26171 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 11827 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 11886 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 11887 CTCTCAAAACATTCAACCCAGCAATCTGTCCAGCATCTTTAGTGGC 11932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3717389442503880