Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value SEQ43688 138 2e-27 seq105552 96.9 6e-15 >SEQ43688 Length=11187 Score = 138 bits (152), Expect = 2e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| ||||||||||| || ||||| |||||||| || || | || ||| | Sbjct 3878 GATAGCAGGAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAAT 3819 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| || || || || |||||||| | |||||||| || || ||||| ||||| Sbjct 3818 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTT 3759 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||||||||| | ||| | || || || ||| |||||||||| || Sbjct 3758 CACTATGTTTACTTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 3708 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 |||||||| || ||||| | ||| |||| || |||||| ||||||| | |||||||| Sbjct 1930 GCATTTTTTGGAGCTCATATCAATGCTTTCATTCATGTTGTTATGTACATGTATTATGGA 1871 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | | ||| | ||||| | |||||||| || ||| | || ||| Sbjct 1870 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTACCTTTGGTGGAAACGATACTTGACCATA 1811 Query 58661 ATGCAATTGGTA 58672 |||||||| ||| Sbjct 1810 ATGCAATTAGTA 1799 >seq105552 Length=5688 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | || | || || ||||| |||| ||||| || |||||||| || Sbjct 79 GGTTCAGTTCCATGTGACTCTTGGCCACACCGCCCTGTCTATTTATATTGATTGCCCCTT 138 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 ||| ||||||| ||| ||| || || ||||| | | ||||| || | ||||||| Sbjct 139 TCCTAAATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTATTCTGTTTGG 198 Query 58789 TAACTTCTATTTTAGAACATACAAGA 58814 ||||||||| | | | |||||||||| Sbjct 199 TAACTTCTACTATCGGACATACAAGA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898065490076800