Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq252873 141 9e-29 seq291000 120 3e-22 seq212999 95.1 1e-14 >seq252873 Length=5941 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 1230 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA-TCTTCCAGCT 1172 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || |||| |||||| |||||||| |||||||||||||| ||||| Sbjct 1171 GTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCT 1112 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| |||||||||| || | ||||| ||| ||||||| Sbjct 1111 TGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 1052 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 1051 TCAAGGTCTTCACAAAGATCTGCAT 1027 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | |||| | | | || || ||||| |||| Sbjct 1452 GGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCA-TCTTCCAGCTGTTTGC 1394 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||| || || ||||| |||||||||||||| |||||| || Sbjct 1393 CGGCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 1334 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||||||||| || | ||||| ||| |||||||||| | Sbjct 1333 TGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAAGG 1274 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 1273 TCTTCACAAAGATCTGCATG 1254 >seq291000 Length=249 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 204 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 146 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || |||| |||||| || ||||| ||||||||||| || ||||| Sbjct 145 GTTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCT 86 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| |||||||||| || | ||||| ||| || || | Sbjct 85 TCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAG 26 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 25 TCAAGGTCTTCACAAAGATCTGCAT 1 >seq212999 Length=2373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 148492 CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCT 148551 |||||||||||| ||| | ||| || || ||| || ||||| |||||||| |||| Sbjct 1840 CGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGGCCAGCTCGCAGCTGGCCT 1781 Query 148552 CGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGC 148611 | ||||| | ||||||||| |||||| || ||| ||||||| || ||| || Sbjct 1780 CCAGCGCCCAGTAGTAAATGGTCTCGAAGATCTGCTGGTTGAGCCGCTGGGCCTGGGGGC 1721 Query 148612 TTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAA 148671 | ||| | || | |||| | | || |||||||| |||||||| || || | ||| | Sbjct 1720 TCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACCCCGATGCCGA 1661 Query 148672 TGGGCCGGTG 148681 |||| || || Sbjct 1660 TGGGGCGATG 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480560278271200