Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq147302 143 3e-29 SEQ88044 109 6e-19 >seq147302 Length=2612 Score = 143 bits (158), Expect = 3e-29 Identities = 568/884 (64%), Gaps = 21/884 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||||| ||| || ||||| | | || || Sbjct 1064 ATCAAACTTGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGAC 1120 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || ||||| || || |||| || || || | || || | Sbjct 1121 TCCAAAGACACATACAGAACGGACGTGAACTCCATTGCAAGGAGGGTAAGGAGCACCCTT 1180 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||| ||||| |||| |||||||| || |||| | | || | ||| ||||| Sbjct 1181 GGATACATCGCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAACTGCATTCATATCGGA 1240 Query 162300 GGTGTCGTACTTGTACACTGACGGC-ACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || || ||| ||||| ||| ||||| |||||||| | || | || ||| | | Sbjct 1241 AACATCATATTTGC-CACTGGCGGAGACGGCACCAGGAACCTCAGGGATTCGCTGAATTG 1299 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| | || ||| || ||||| || || || || | ||| || || || | | Sbjct 1300 TTGCCCATAAGTATTCATCAGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAA 1359 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | ||| | || || || || | ||| | |||| ||| || || || | Sbjct 1360 TTTTGCTATTCTCTAATATATATTCCACAAACCTCCTACTAACAACAAAATAGGCACTTC 1419 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || | |||| || | ||| ||| ||| ||||||| || ||||| || | Sbjct 1420 CAGAGAAAATGGGTGTGTTGAGAGGTGGGTGCTGTTTGTCTATCCCTGTGTTTTTTATCT 1479 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG---T 162595 | || || | | |||| ||| ||||||| || |||| || | || || | Sbjct 1480 TGCCATCAATTATTTCGTGATGTTTCTTCCACCTCACC-TCTT--TGTTTGAAGGCATTT 1536 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || |||| || || ||| | ||| |||| | ||| || ||| ||| Sbjct 1537 TTTCCGTTTCTAAGCTATTTTCACCGTTGAGGGCTTTCAATTTCTCCACTATTTCTTGAT 1596 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| || | || || || | ||||||||||| || | || ||||| | || | Sbjct 1597 TGGTTTTGATTGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCC 1656 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | || ||||||| | ||||| || || || || || || ||||| || || |||| Sbjct 1657 TCCTATAGAGATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACA 1716 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || || ||||| |||| | |||||||| | ||||| || | |||||| | | Sbjct 1717 CTACACTTTCCAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCCTTTA 1776 Query 162836 C----GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT-ATAGATT 162890 | | | || ||| | ||| | || | || || || | ||||| |||| || Sbjct 1777 CAGCTGCCAAGAAAGACTCTGGGGAC----TTTTTGTCAACATGAATGCAGTAATAG-TT 1831 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| || || |||| ||||| | |||||| | ||| | || ||||| | |||| Sbjct 1832 CTGAGGAGCATATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCAC 1891 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || ||||| || ||||| || || || || || | || |||| Sbjct 1892 TATTGAATATGCAATGGGAAATTCTGCTTCTTCTTGGCTAAGAG 1935 >SEQ88044 Length=16043 Score = 109 bits (120), Expect = 6e-19 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||| |||| | ||||||||||| || ||||| | ||| || || || || ||||| Sbjct 1389 CAGGTCCTTCATGCAGTTCAGATCAGCTTGGACCCTGGACCAAGAGGCATAGACCACGCT 1330 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 |||| | ||| || | ||| ||||||||||| || || | || || ||||| Sbjct 1329 CTCCTGCTTAGAAGCCAGAAAAACATTGTCGAAGCAGGAGGCAATGGCCTGAACGGCTTT 1270 Query 162843 T--GAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 | || || ||||| | ||| || || ||||| || || |||| |||||||| || Sbjct 1269 TTGGAAAAGTTCGGG--AGATTTGCTGTCCACGTGGACACAATATACGTTCTGAGGAGCA 1212 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 |||||| |||| ||| || || |||||||| ||||| | || | ||| || ||||| Sbjct 1211 AAGATGGATCTCAATAACCTTTCAAACATCTCGATCTTTTCATGGATCACCATGGAATAA 1152 Query 162961 GCTATGGGGAA 162971 || || ||||| Sbjct 1151 GCAATAGGGAA 1141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575009273248000