Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq245910 89.7 5e-13 seq252873 87.8 2e-12 seq291000 84.2 2e-11 >seq245910 Length=872 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 147504 GTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATT 147563 ||||| |||||| |||| ||| ||||||||||| || ||| |||| || ||||| || Sbjct 841 GTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 782 Query 147564 GCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||| ||||| ||||| | ||| ||| |||||||||| || Sbjct 781 GCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 743 >seq252873 Length=5941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || ||||||||||||||| | || || | Sbjct 1469 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCA 1410 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| || | ||||||||| ||||| |||||||| || Sbjct 1409 TCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTG 1350 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || ||| | |||||||| || | || | Sbjct 1349 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATG 1290 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | || ||||||||| Sbjct 1289 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 1254 >seq291000 Length=249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||| |||||||| |||| | Sbjct 194 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCA 135 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| |||||||| ||||| || || || | Sbjct 134 AAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTCGCCTTGACG 75 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || ||||||| || || Sbjct 74 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTC 15 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 14 ACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473790972376800